Gene detail

Detail information of GWHGAAZE001636

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006356872.1	PREDICTED: pyruvate kinase, cytosolic isozyme-like [Solanum tuberosum]
Swissprot	tr\|Q42954\|KPYC_TOBAC	Pyruvate kinase, cytosolic isozyme
trEMBL	tr\|M1AQZ1\|M1AQZ1_SOLTU	Pyruvate kinase {ECO:0000256\|RuleBase:RU000504}
TAIR10	AT5G56350.1	Pyruvate kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	55336529	55339250	-
GWHAAZE00000001	mRNA	55336529	55339250	-
GWHAAZE00000001	exon	55338849	55339250	-
GWHAAZE00000001	exon	55337535	55337996	-
GWHAAZE00000001	exon	55336529	55337341	-
GWHAAZE00000001	five_prime_UTR	55339095	55339250	-
GWHAAZE00000001	CDS	55338849	55339094	-
GWHAAZE00000001	CDS	55337535	55337996	-
GWHAAZE00000001	CDS	55336529	55337341	-

Transcript Sequence
>GWHTAAZE001640 TTCTCCTCTTTTCTCTGTTCTCTCCTTCTCTGTAATTGGTATTCTGATCAAACCTAGTTAATTTTCTCCTCTTAACAAAAATAATTCTTTCATTTGTATTTCTGAGTGATCTGAGTGAAGAAATATATTAACATAATTAACTGTAAGAGTCGAAAAATGGAGATGATGAAGGAAAACGATAAGAATAATAATTTTAAGAGGCCGAAGACAAAGATAGTGTGCACGTTGGGGCCAGCATCAAGGTCGGTCCCAATGGCAGAGAAGCTGCTGAGGGCTGGTATGAATGTCGCGCGTTTCAACTTCTCGCATGGATCGTACGAATATCACCAGGAAACTCTGGATAACCTTAAGCAGGCCATGAATAACACCGGCATCCTCTGCGCTGTCATGCTCGACACCAAGGGTCCAGAGATACGAACAGGGTTTTTGAAAGACGGGAAGCCGATACAACTGAAGCAGGGACAAGAAATAACGATATCGACAGACTACAGCATCAAAGGGGACGAGAAGATGATATGTATGAGCTACAAGAAGTTAGCCGAGGACGTAAAGCCCAACAGCATGATACTTTGTGCAGACGGGACCATCTCGTTCAACGTTCTGTCCTGCGACAAGGAGAAGGGCTTGGTTAAATGCCGCTGCGAGAACACTGCCCTTCTCGGGGAGAGAAAGAACGTTAATCTTCCCGGTGTCATTGTCAATCTCCCCACTTTGACGGACAAGGATAAGGATGATATCTTGAAATGGGGAGTTCCTAATAATATAGATATGATAGCTTTGTCTTTCGTCCGGAAGGGTTCCGATCTGATTGAGGTTCAAAAGCTTCTCGGAGATCATGCCAAGAACATCCTCCTCATGTCAAAGGTTGAAAATCAAGAAGGTGTGGCCAACTTTGACGATATACTAGCCAACTCCGACGCATTTATGGTGGCAAGAGGCGACCTTGGAATGGAAATTCCGATAGAAAAGATATTTTTAGCTCAAAAGGTGATGGTGTACAAATGCAACATCCAAGGAAAGCCGGTGGTGACAGCGACCCAAATGTTGGAGTCGATGATAAAATCACCAAGGCCGACGAGGGCAGAAGCGACGGACGTAGCGAATGCTGTTCTTGATGGCACCGACTGCGTAATGCTCAGCGGTGAAACTGCAGCCGGTGCCTACCCAGAGCAGGCAGTTCTAACAATGGCCAAGATTTGCGTTGAAGCAGAAAGCACAATCGGATATGCGGACGTGTTCAAAAGGATAACGGCTAGCGCGCCCGTGCCAATGAGCCCGTTAGAGAGCCTGGCCTCCTCTGCGGTTCGAATGGCCAACTCGTCTAAGGCGGTTCTCATATTGGTGCTCACCCGAGGGGGAAGTACCGCAAAGCTGGTGGCTAAGTATAGACCTGGGATGCCCATTTTGTCGGTCGTTGTACCGGAGATTAAGACTGATTCGTTCGATTGGTCGTGTAGTGACGAATCTCCGGCTAGGCATAGCCTTATCTTTAGGGGGTTGGTTCCGATCTTATGCGAGGGTTCTGCAAGGGCCTCTCATGCTGAGTCCACTGAGGAGGCCCTCGACTTCGCCTTGCAGCACGCCAAAACCAAAGGAATGTGCAAGGAGGGCGACTCTATAGTCGCCCTTCATCGCGTTGGAACTGCCTCCATAATCAAGATTGTTACCGTCAACTGA

Network for GWHGAAZE001636

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00224.22	PK	17	360	3.40E-153
PF02887.17	PK_C	376	503	1.50E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00873	PK, pyk	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Glycolysis / Gluconeogenesis	map00010
		Pyruvate metabolism	map00620
		Purine metabolism	map00230
		Glucagon signaling pathway	map04922

Gene Ontology

GO term	Ontology	Name
GO:0006096	biological_process	glycolytic process
GO:0004743	molecular_function	pyruvate kinase activity
GO:0000287	molecular_function	magnesium ion binding
GO:0030955	molecular_function	potassium ion binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.055
	SRR3591707	mature leaf	2.705
	SRR3591708	Shoot apex	0.033
	SRR3591709	Stem	0.161
	SRR3591710	White floral bud	1.118
	SRR3591711	White flower	0.143
	SRR3591712	Green floral bud	42.185
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	29.141
	SRR8316896	Juvenile bud stage	66.218
	SRR8316897	Juvenile bud stage	24.118
	SRR8316894	Third green stage	14.283
	SRR8316900	Third green stage	51.979
	SRR8316901	Third green stage	58.400
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.226
	SRR8316903	Complete white stage	0.049
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.082
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.084
	SRR8316908	Gold flowering stage	0.082
SRP132670	SRR6706286	Control	22.185
	SRR6706287	Light intensity 50%	20.718
	SRR6706288	Light intensity 20%	16.874
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	40.974
	CNS0095593	Slightly white alabastrum(diploid) 2	24.589
	CNS0095594	Slightly white alabastrum(diploid) 3	57.417
	CNS0095595	Whole white alabastrum(diploid) 2	35.693
	CNS0095596	Whole white alabastrum(diploid) 3	46.592
	CNS0095597	Whole white alabastrum(diploid) 4	27.548
	CNS0095598	Silvery flower (diploied) 1	0.415
	CNS0095599	Silvery flower (diploied) 2	0.345
	CNS0095600	Silvery flower (diploied) 3	0.022
	CNS0095601	Golden flower (diploid) 1	0.274
	CNS0095602	Golden flower (diploid) 2	0.071
	CNS0095603	Golden flower (diploid) 3	0.015
	CNS0095604	Slightly white alabastrum(tetraploid) 1	74.319
	CNS0095605	Slightly white alabastrum(tetraploid) 2	67.405
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.114
	CNS0095607	Whole white alabastrum(tetraploid) 1	76.898
	CNS0095608	Whole white alabastrum(tetraploid) 2	74.865
	CNS0095609	Whole white alabastrum(tetraploid) 3	64.130
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.088
	CNS0095612	Silvery flower (diploied) 3	0.407
	CNS0095613	Golden flower (tetraploid) 1	0.025
	CNS0095614	Golden flower (tetraploid) 2	0.036
	CNS0095615	Golden flower (tetraploid) 3	0.095
CRA001975	CRR073297	Stem 1	31.538
	CRR073298	Stem 2	27.506
	CRR073299	Stem 3	24.127
	CRR073300	Leaf 1	20.523
	CRR073301	Leaf 2	25.864
	CRR073302	Leaf 3	28.094
	CRR073303	Juvenile bud 1	11.425
	CRR073304	Juvenile bud 2	11.897
	CRR073305	Juvenile bud 3	0.136
	CRR073306	Third green 1	0.374
	CRR073307	Third green 2	0.140
	CRR073308	Third green 3	0.227
	CRR073309	Second white 1	0.013
	CRR073310	Second white 2	0.037
	CRR073311	Second white 3	0.037
	CRR073312	Silver flowering 1	0.055
	CRR073313	Silver flowering 2	0.079
	CRR073314	Silver flowering 3	0.130
	CRR073315	Gold flowering 1	0.144
	CRR073316	Gold flowering 2	0.133
	CRR073317	Gold flowering 3	0.742
	CRR073318	Tawny withering 1	0.516
	CRR073319	Tawny withering 2	1.844
	CRR073320	Tawny withering 3	0.099