Gene detail

Detail information of GWHGAAZE001644

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009591795.1	PREDICTED: L-ascorbate oxidase homolog [Nicotiana tomentosiformis]
Swissprot	tr\|P29162\|ASOL_TOBAC	L-ascorbate oxidase homolog (Precursor)
trEMBL	tr\|Q6UN74\|Q6UN74_TOBAC	Ntp302 {ECO:0000313\|EMBL:AAQ90184.1}
TAIR10	AT1G55570.1	SKU5 similar 12

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	55537225	55538883	-
GWHAAZE00000001	mRNA	55537225	55538883	-
GWHAAZE00000001	exon	55537225	55538883	-
GWHAAZE00000001	CDS	55537225	55538883	-

Transcript Sequence
>GWHTAAZE001648 ATGGTACCCACATTGTTATTGTTGTGTTTATCGGCCGCAGTGGTTCGAGCAGAGGACCCTTATTTATTCTTTGAGTGGCATGTTACATACGGCACCATATCACCGCTGGGCGTGCCACAAGAAGGCATTCTGATCAACGGCGAGTTCAAAGGCCCGACCATTAACTGCACTTCGAACAACAACATCGTGATCAATGTGTTCAATGAGCTAGACGAACCACTGCTCTTCACCTGGGAAGGCGTACAACAAAGGAAGAACTCGTGGCAAGATGGTACCCCGGGGACTATGTGCCCTATTCAACCGGGTACCAACTACACCTACCATTTCCAGGTTAAGGACCAAATCGGGACTTACTATTACTTCCCAACCACTAATTTGCACAGGGCTTCCGGTGGTATTGGGATGCTCCGAGTCCACAGCCGAGAACTTATCCCAGTCCCTTTCGACAACCCTGCAGAGGAGTTCGATGTTTTGATGGGTGACTGGTATACCAAGGGCCACAAGGCCATGAAGAAGCAGCTCGATAGCGGTGCATCCATTGGGAGGCCAGATGGGATCCAGATCAATGGCAAGTCTGGCAAGCCTGGTCAAAAGCTCGAAACCCTTGCAGTGATGGAAGCTGGTAAGACTTACAGGTACAGGTTCTGCAATATCGGGATGAGGACTTCGTTGAATTTTAGGTTCCAAGGCCATACGATGAAGCTGGTTGAGATCGAAGGTTCTCATACAATTCAGAATGTTTACGACTCGCTTGACTTGCACGTCGGACAGTGCATGTCTGTTCTTGTCACTGCTGATAACGAGCCTAAGGATTACTACCTAGTGGTGACGAGTAGGTTCACCAAGGTTCCTCTCTCTACTGTAGCTCTTATTAGCTACGCCAACAGCAAGGGAGAGGCGTCTGCTGAGCTCCCGCCACCCCCTGCCGAGGATACAGAAGGAATCTACTGGTCCATTAACCAGTTTCGCTCCTTCAGATGGAACCTCACAGCCAGCGCAGCCCGCCCAAATCCTCAAGGATCCTATCACTACGGAAAAATCAACATCACCCGCACCATCAAGCTCGTCAACAGCAGGAACTACGTGGATGGAAAGCTCCGGTTCGCAATCAATGGAGTCTCCCACATTGATCCCTCAACTCCTCTGAAGCTGGCAGAGTACTTTGGAGCGGCCGACAAGGTGTTCAAGTACGATACCATTTCAGACGATCCCGACATGACCAACAACAAAGAGGTGGTATTGGCACCCAATGTCGTGAACGCAACCTTCCGTAAGTTTGTCGAGATAATCTTCGAGAACCGTGAGAGGACCATCCAGACATGGCACCTGGACGGATACTCGTTCTTTGCAGTGGCAATCGAGCCAGGGAGGTGGAGCCCCGAGAAGAGGAGGAACTACAACCTGTTGGATACCGTAAGCAGGCACAACATCCAAGTTTACCCGAACTCGTGGGCAGCAGTGATGATGACATTGGATAACGCCGGAATGTGGAGCTTGAGGTCAGAGATGTGGGAGAGGTTCTACTTGGGGCAGCAAATGTATATTAGTGTTCTATCACCTGAACGCTCTCTAAGGGATGAATACAACATTCCAGAAAACTCCCAGCTGTGTGGAGTTGTTGTTGGCTTGCCCAAGCCCCCTTCTTACCTTCCTGCCTAA

Network for GWHGAAZE001644

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07732.16	Cu-oxidase_3	28	142	8.20E-39
PF00394.23	Cu-oxidase	157	293	5.70E-36
PF07731.15	Cu-oxidase_2	395	520	7.90E-25
PF17284.3	Spermine_synt_N	55	108	1.10E-22
PF01564.18	Spermine_synth	111	191	1.30E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00423	E1.10.3.3	Metabolic pathways	map01100
		Metabolic pathways	map01100
		Ascorbate and aldarate metabolism	map00053
		Cysteine and methionine metabolism	map00270
		Arginine and proline metabolism	map00330
		Glutathione metabolism	map00480

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0003824	molecular_function	catalytic activity
GO:0005507	molecular_function	copper ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.370
	SRR3591706	second leaf	0.150
	SRR3591707	mature leaf	1.437
	SRR3591708	Shoot apex	1.509
	SRR3591709	Stem	14.382
	SRR3591710	White floral bud	1815.070
	SRR3591711	White flower	93.108
	SRR3591712	Green floral bud	1949.241
	SRR3591713	Yellow flower	65.407
SRP173429	SRR8316895	Juvenile bud stage	331.215
	SRR8316896	Juvenile bud stage	995.250
	SRR8316897	Juvenile bud stage	404.395
	SRR8316894	Third green stage	287.220
	SRR8316900	Third green stage	1106.909
	SRR8316901	Third green stage	1225.038
	SRR8316898	Complete white stage	1.569
	SRR8316899	Complete white stage	8.234
	SRR8316903	Complete white stage	2.760
	SRR8316902	Silver flowering stage	17.193
	SRR8316904	Silver flowering stage	32.185
	SRR8316905	Silver flowering stage	10.677
	SRR8316906	Gold flowering stage	6.333
	SRR8316907	Gold flowering stage	1.661
	SRR8316908	Gold flowering stage	2.044
SRP132670	SRR6706286	Control	661.339
	SRR6706287	Light intensity 50%	615.368
	SRR6706288	Light intensity 20%	527.929
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1530.506
	CNS0095593	Slightly white alabastrum(diploid) 2	1186.651
	CNS0095594	Slightly white alabastrum(diploid) 3	1931.709
	CNS0095595	Whole white alabastrum(diploid) 2	2583.261
	CNS0095596	Whole white alabastrum(diploid) 3	3136.174
	CNS0095597	Whole white alabastrum(diploid) 4	3489.588
	CNS0095598	Silvery flower (diploied) 1	86.369
	CNS0095599	Silvery flower (diploied) 2	295.169
	CNS0095600	Silvery flower (diploied) 3	61.043
	CNS0095601	Golden flower (diploid) 1	96.151
	CNS0095602	Golden flower (diploid) 2	48.379
	CNS0095603	Golden flower (diploid) 3	45.533
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2976.724
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3713.677
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.164
	CNS0095607	Whole white alabastrum(tetraploid) 1	4745.230
	CNS0095608	Whole white alabastrum(tetraploid) 2	4975.559
	CNS0095609	Whole white alabastrum(tetraploid) 3	2296.639
	CNS0095610	Silvery flower (diploied) 1	48.293
	CNS0095611	Silvery flower (diploied) 2	206.725
	CNS0095612	Silvery flower (diploied) 3	582.615
	CNS0095613	Golden flower (tetraploid) 1	117.023
	CNS0095614	Golden flower (tetraploid) 2	20.239
	CNS0095615	Golden flower (tetraploid) 3	277.444
CRA001975	CRR073297	Stem 1	517.511
	CRR073298	Stem 2	495.843
	CRR073299	Stem 3	340.909
	CRR073300	Leaf 1	1256.535
	CRR073301	Leaf 2	934.432
	CRR073302	Leaf 3	560.653
	CRR073303	Juvenile bud 1	863.015
	CRR073304	Juvenile bud 2	640.628
	CRR073305	Juvenile bud 3	73.548
	CRR073306	Third green 1	333.711
	CRR073307	Third green 2	386.435
	CRR073308	Third green 3	359.788
	CRR073309	Second white 1	11.422
	CRR073310	Second white 2	74.257
	CRR073311	Second white 3	79.102
	CRR073312	Silver flowering 1	332.672
	CRR073313	Silver flowering 2	293.690
	CRR073314	Silver flowering 3	207.410
	CRR073315	Gold flowering 1	339.456
	CRR073316	Gold flowering 2	127.240
	CRR073317	Gold flowering 3	46.567
	CRR073318	Tawny withering 1	398.460
	CRR073319	Tawny withering 2	380.217
	CRR073320	Tawny withering 3	377.566