Gene detail

Detail information of GWHGAAZE001661

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP05558.1	4.4719E-127	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q6L438\|R1A6_SOLDE	8E-78	Putative late blight resistance protein homolog R1A-6
trEMBL	tr\|K4CXZ9\|K4CXZ9_SOLLC	2E-137	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc10g008220.2.1}
TAIR10	AT5G35450.1	1E-43	Disease resistance protein (CC-NBS-LRR class) family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	57010958	57017738	-
GWHAAZE00000001	mRNA	57010958	57017738	-
GWHAAZE00000001	exon	57016880	57017738	-
GWHAAZE00000001	exon	57012929	57013788	-
GWHAAZE00000001	exon	57010958	57012565	-
GWHAAZE00000001	CDS	57016880	57017738	-
GWHAAZE00000001	CDS	57012929	57013788	-
GWHAAZE00000001	CDS	57010958	57012565	-

Transcript Sequence
>GWHTAAZE001665 ATGGATCATACTGATGGAAGTATCATGTGGAATTGCGGCGACGAGAGAAGGAAATTAGTTGATCGACTTACTGGATCGCCAGATCAACTGGAGGTTATTTCGATCGTGTTGAATAGGACTGAAGAAACGGTGAGGAAATTGCCTATTCAAGTCTATAATCTTCCTTACATTTCGAATAGCACTAAAGAAACGGTGAGGAACTTGTCTATTCATGTCTATAATGATCCTTACATTCTCTCCCATTTTCAGATTGTTGCATTAGCTTCTTTTTCCCTAACCAAGAGTCTGTTGGCCACCATTCTTAGTTTCATTGCGGATTATGGGATTACATATGAAAGTTTTGGAAAAAGCGACCAGGAGTTAGGCCAACAGCTGAACAAAGTCTTAATGGAGCATAGATTTCTGATTTTTATTGATAAGTTGTGGTATATAACTAGCGACTGGGATGATTTGAAAAGGTATTTTCCAGATAATGGAAATGGAAGCAGAATTGTGTTTTGTACTTTGTCCCATCTGTACTGGTTTGGGTTTAAAGTTTCATTAGGCCTTTCACGTCAGCCTCAGCGTCAGCCTTTTGAAACTTGCGATGGTGTTCAGTTATATTTTGTCGGAGCGCAAGAAGAAGAAATCATTTCTGATTATGGAAGTTCATCAATAGCGACGAGTAGTAGTTGTACTAGTGTGAAGGAAGAAAGGATGGTGGGATATGGCGATGACGTAAGGAAGCTCGTTGACCGACTCACTGGACTACAGAAGCGGCTGGAGGTTATTCCAATTGTGGGGATGCCTGGACTAGGCAAGACGACTCTGGCTAGACAAGTTTACGATCATCCCAATGTCGTATATCACTTCCATATTCGACACTGTGATCGACTTACTGGATGGCAAAGTAAATTAGTTGATCGACTTACTGGATCGCCAGATCAACTGGAGGTTATTTCGATCATGTTGAATAGGACTGAAGAAATGGTGAGGAAATTGCCTATTCAAGTCTATAATCCTTACATTTCGAACAGGACTGAAGAAACGGCGAGGAACTTGTCTATTCATGTCTATAATGATCCTTACATTCTCTCCCATTTTCAGATTGTTGCATTAGCTTCTTTTTCCCTAACCAAGAGTTTGTTGGCCACAATTTTATGTTCCATTGCGGATTATGAGATTACATATGAAAGTTTTGGAAAAAGCGACCAGGAGTTAGGCCAACAGCTGAACAAAGTCTTAATGGATCATAGATTTCTGATTTTTATTGATAAGTTGTGGTATAAAACTAGTGACTGGGATGATTTGAAAAGGTATTTTCCAGATAATGGAAATCGAAGCAGAATTGTGTTTTGTACTTTGTCCCATCTGTACTGGTTTGGGTTTAAAGCTTCATCAGGCCTTTCAGGTCAGCCTCGGAGTCAGCCTTTTGAGACTTGCAATGGTGTTCAGTTATATTTTGTTGGAGCTCAAGAAGAAGAAATCATTTCTGATGATGGAAGTTCATCAATAGCGACGAGGAGTAGTCTTACTAGCGTGAAGGAAGAAATGATGGTGGGATATGGTGATGAGGTAAGGAAGCTAGTTGACCGACTCACTGGACTACAGAAGCGGCTGGAGGTTATTCCAATTGTGGGGATGCCTGGACTAGGCAAGACGACTCTGGCTAGACAAGTTTACGATCATCCCAATGTCGTATATCACTTCCATATTCGTGCGTGGACTCGTGTTTCTCAGATCGGAATGCAAATCACCGAAAAATGCAAAGGTCTCCCACTTGCAATTGTTGTCATAGCAGGAATTCTTGCAAATGAAGAGACACCAACTTGGTGGGGGCAAGTTGCTAAAAGTGTGAGTTCTTACATTGTTAGCAACCCGGAGCAATACATGGATACCCTAGCACTTAGTTACAACCACTTACCTCCTCACTTGAAACCATGCTTCCTATATCTGGGGGCTTTCTTAGAAGACCGTGAAATCCCAGTTCGGAAGCTGATTTTGCTGTGGGTCTCCGAGGGGTTCATACGTCACAGTGAGAATGAAAGACTGGAGGATATGGCAGAGGATTACTTGATGGACCTAATCAATAGAAGTTTAGTAATAGTTTCTAAAAAGGGGTCTACTGGACGAATCAAGTCATGTATCATACACGATCTTCTCCGTGAGTTATGCTTGAGAAAATTTAAAGAAGAGAATTTTATGCAGCAATTATACAAATATGATGAAAACTCTACGCCTACAAATCCTATTACAAAAATGCCAGGTCGCGTGTCTATTTATTCAGCTCCTTCCCCTAGTTCTTCTTTAATGCCTTTTTCATCAAATGCCACATCCCTTTTATGTTTTGCGGTTGAGGTCCTTCCAGATTTCATGTCCTTCATTTGTCAAGCCTTCAAGTTTCTTAGGGTATTGGATTTGTCATCTATCAAGATCCCCCTCTTTCCGAGCGAAATAATACAGTTAGTTGAGCTGAGGTACATCGCCATTCAAGCTGATGTTGGAAGTCCCCCATCATCAATTTCCAGCCTCCGTTACCTAGAAACCCTTATTGTATCATCAAGGAGCAATGTTACTCTACCGAGGAACACATGGAAGATGGTAAACCTAAGACATGTTTGCATTAAGCTAGGGGTAAACGAGGTAGAAAAACCTTCTTTTGAAGAAGTGCAAGACGATGATGGTTATCCCCTCATTTTGGAAAATCTACAAACTCTCTCATTTGTGTGCCCTTCTCGGTATTGTAAGGATGTTTTGAAAAGGTCTCCCCGTTTGAGGAAGCTGGGATTTTGTGGACCTTTGCTCTCAGAATCAAGGGAATTAAGATTTCCAATGCTAGACTATGCAGACCAACTTGAAATGCTAAAGTTGTTCAACACAGCCTTCTACCGTGAAGCTTCCAGTTCATGCAGTCCCGATATGTTCCCCAACAGACTTAAAAGGCTTACTTTAACAAATACTGCTTTAGCATGGAATCAGATGTGGACCCTTGGCATGTTACCTAACCTTGAAGTTCTCAAATTAAAGCTTCATGCATGTGTTGGACGACTATGGGAAACAAGTGATAATGGGTTTCTTCGACTCAAGTTCTTAAAATTCCAAGACCTTGACATTGTGCAGTGGATTGCCTCCAGTAATCACTTTCCACGTCTTGAGCATTTAGTGTTGCACGGTTGCCAAAAACTTGAGGAGATTCCTTCAAGTTTAGGAGATATACCCACACTGGAGATGATTGAGGTACGTTGGTGTAGTGAAACTGCTGCAAATTCTGCCCATGATATTAAGAAAGATCAAGAGAACAAGGGAAACGATTGTGTGAAGGTCAGTACAAACGGGCAAAGGGGATGA

Network for GWHGAAZE001661

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00931.23	NB-ARC	77	168	1.90E-05
PF00931.23	NB-ARC	239	447	1.10E-14
PF00931.23	NB-ARC	518	573	4.20E-09
PF00046.30	Homeodomain	27	81	7.40E-16
PF01852.20	START	224	448	7.90E-53

Protein Sequence

>GWHPAAZE001663
MDHTDGSIMWNCGDERRKLVDRLTGSPDQLEVISIVLNRTEETVRKLPIQVYNLPYISNSTKETVRNLSIHVYNDPYILSHFQIVALASFSLTKSLLATILSFIADYGITYESFGKSDQELGQQLNKVLMEHRFLIFIDKLWYITSDWDDLKRYFPDNGNGSRIVFCTLSHLYWFGFKVSLGLSRQPQRQPFETCDGVQLYFVGAQEEEIISDYGSSSIATSSSCTSVKEERMVGYGDDVRKLVDRLTGLQKRLEVIPIVGMPGLGKTTLARQVYDHPNVVYHFHIRHCDRLTGWQSKLVDRLTGSPDQLEVISIMLNRTEEMVRKLPIQVYNPYISNRTEETARNLSIHVYNDPYILSHFQIVALASFSLTKSLLATILCSIADYEITYESFGKSDQELGQQLNKVLMDHRFLIFIDKLWYKTSDWDDLKRYFPDNGNRSRIVFCTLSHLYWFGFKASSGLSGQPRSQPFETCNGVQLYFVGAQEEEIISDDGSSSIATRSSLTSVKEEMMVGYGDEVRKLVDRLTGLQKRLEVIPIVGMPGLGKTTLARQVYDHPNVVYHFHIRAWTRVSQIGMQITEKCKGLPLAIVVIAGILANEETPTWWGQVAKSVSSYIVSNPEQYMDTLALSYNHLPPHLKPCFLYLGAFLEDREIPVRKLILLWVSEGFIRHSENERLEDMAEDYLMDLINRSLVIVSKKGSTGRIKSCIIHDLLRELCLRKFKEENFMQQLYKYDENSTPTNPITKMPGRVSIYSAPSPSSSLMPFSSNATSLLCFAVEVLPDFMSFICQAFKFLRVLDLSSIKIPLFPSEIIQLVELRYIAIQADVGSPPSSISSLRYLETLIVSSRSNVTLPRNTWKMVNLRHVCIKLGVNEVEKPSFEEVQDDDGYPLILENLQTLSFVCPSRYCKDVLKRSPRLRKLGFCGPLLSESRELRFPMLDYADQLEMLKLFNTAFYREASSSCSPDMFPNRLKRLTLTNTALAWNQMWTLGMLPNLEVLKLKLHACVGRLWETSDNGFLRLKFLKFQDLDIVQWIASSNHFPRLEHLVLHGCQKLEEIPSSLGDIPTLEMIEVRWCSETAANSAHDIKKDQENKGNDCVKVSTNGQRG

Gene family

Gene family	subfamily
Transcription Factors Family	HB-HD-ZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0043565	molecular_function	sequence-specific DNA binding
GO:0003677	molecular_function	DNA binding
GO:0008289	molecular_function	lipid binding
GO:0043531	molecular_function	ADP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.882
	SRR3591706	second leaf	1.187
	SRR3591707	mature leaf	1.413
	SRR3591708	Shoot apex	1.740
	SRR3591709	Stem	2.114
	SRR3591710	White floral bud	3.329
	SRR3591711	White flower	3.414
	SRR3591712	Green floral bud	3.212
	SRR3591713	Yellow flower	2.374
SRP173429	SRR8316895	Juvenile bud stage	0.322
	SRR8316896	Juvenile bud stage	0.426
	SRR8316897	Juvenile bud stage	0.208
	SRR8316894	Third green stage	0.180
	SRR8316900	Third green stage	0.406
	SRR8316901	Third green stage	0.447
	SRR8316898	Complete white stage	0.231
	SRR8316899	Complete white stage	0.667
	SRR8316903	Complete white stage	0.664
	SRR8316902	Silver flowering stage	0.240
	SRR8316904	Silver flowering stage	0.284
	SRR8316905	Silver flowering stage	0.138
	SRR8316906	Gold flowering stage	0.365
	SRR8316907	Gold flowering stage	0.500
	SRR8316908	Gold flowering stage	0.678
SRP132670	SRR6706286	Control	0.215
	SRR6706287	Light intensity 50%	0.216
	SRR6706288	Light intensity 20%	0.320
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.360
	CNS0095593	Slightly white alabastrum(diploid) 2	0.195
	CNS0095594	Slightly white alabastrum(diploid) 3	0.134
	CNS0095595	Whole white alabastrum(diploid) 2	0.202
	CNS0095596	Whole white alabastrum(diploid) 3	0.340
	CNS0095597	Whole white alabastrum(diploid) 4	0.161
	CNS0095598	Silvery flower (diploied) 1	0.261
	CNS0095599	Silvery flower (diploied) 2	0.294
	CNS0095600	Silvery flower (diploied) 3	0.728
	CNS0095601	Golden flower (diploid) 1	0.412
	CNS0095602	Golden flower (diploid) 2	0.544
	CNS0095603	Golden flower (diploid) 3	0.582
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.105
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.463
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.739
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.140
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.485
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.015
	CNS0095610	Silvery flower (diploied) 1	2.667
	CNS0095611	Silvery flower (diploied) 2	2.745
	CNS0095612	Silvery flower (diploied) 3	3.411
	CNS0095613	Golden flower (tetraploid) 1	1.293
	CNS0095614	Golden flower (tetraploid) 2	2.774
	CNS0095615	Golden flower (tetraploid) 3	3.468
CRA001975	CRR073297	Stem 1	0.205
	CRR073298	Stem 2	0.416
	CRR073299	Stem 3	0.112
	CRR073300	Leaf 1	0.319
	CRR073301	Leaf 2	0.145
	CRR073302	Leaf 3	0.201
	CRR073303	Juvenile bud 1	0.240
	CRR073304	Juvenile bud 2	0.080
	CRR073305	Juvenile bud 3	0.266
	CRR073306	Third green 1	0.190
	CRR073307	Third green 2	0.144
	CRR073308	Third green 3	0.187
	CRR073309	Second white 1	0.065
	CRR073310	Second white 2	0.182
	CRR073311	Second white 3	0.328
	CRR073312	Silver flowering 1	0.121
	CRR073313	Silver flowering 2	0.049
	CRR073314	Silver flowering 3	0.074
	CRR073315	Gold flowering 1	0.077
	CRR073316	Gold flowering 2	0.216
	CRR073317	Gold flowering 3	0.123
	CRR073318	Tawny withering 1	0.357
	CRR073319	Tawny withering 2	0.178
	CRR073320	Tawny withering 3	0.200