Gene detail

Detail information of GWHGAAZE001725

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP17457.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8L746\|NPR3_ARATH	0	Regulatory protein NPR3
trEMBL	tr\|A0A068VA61\|A0A068VA61_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_160 {ECO:0000313\|EMBL:CDP17457.1}
TAIR10	AT5G45110.1	4E-151	NPR1-like protein 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	58794186	58798823	-
GWHAAZE00000001	mRNA	58794186	58798823	-
GWHAAZE00000001	exon	58798275	58798823	-
GWHAAZE00000001	exon	58796777	58797541	-
GWHAAZE00000001	exon	58795497	58795716	-
GWHAAZE00000001	exon	58794186	58794457	-
GWHAAZE00000001	CDS	58798275	58798823	-
GWHAAZE00000001	CDS	58796777	58797541	-
GWHAAZE00000001	CDS	58795497	58795716	-
GWHAAZE00000001	CDS	58794186	58794457	-

Transcript Sequence
>GWHTAAZE001729 ATGGAAAACACGAATGAGTTGTCATCGTCTATGAGCTTTGCTTCGTCTTCATATCTATCGAATGGATCGAGTAGTCATAATGTAACCTCATCCACCGGCTCTGAGACGGGAGCCAATCTTGACTTATTGAGTTTGAGTAAACTAAGTGGAAGCCTCGAAAAGCTCTTGCTCGATTCCAATTATAACTATAGTGATGCTGAGATAGTGGTCAACGGGATAAGCGTAGGTGTTCATCGCTGTATTTTGGCTTCACGGAGTCCCTTTTTTGAACAGCTTTTTAAGAAGGGTAATGATGATAAAAGCAATAATTGTAAGCCAAAATATCTCATGACTGAATTGGTACCTTATGGGGTGGTGGGGATTGACGCGTTTATGGTATTCTTGAACTATATGTATACTGGAAAGCTTAAGCCGTCTCCACCAGAGGTGTCGACGTGCGTTGATGATGGTTGTGCACATGATGCTTGCCTCCCAGCCATAAGTTACGCAGTGGAACTCATGTATGCCTCGGCCACCTTTCAAATGAAAGAGCTCGTTTTGCTTGTTCAGCGGCGTCTTCTAAACTTTGTGGACAAGGCATTTGTGGAAGATGTAATCCCAATCCTAGTGGCAGCCTTCCATTGCCAGCTCAACCAGCTTCTCTCGCACTGCGTCGACAGAGTAGCCCGATCTGACCTCGACACCTTCTCTCTGGAAAAAGACCTACCTCAAGATCTTCTTGCCAAAATCAAATCACTTCGGCCCAAACCCGTGACAACGGAATCGGATCTTGCAAATGAAAAGAGAATCAGGAGAATCCAAAAGGCACTAGACTGGGATGACGTTGAATTAGTAAAGCAACTACTCGGCGAATCTAACATCACTTTAGACAGTGCTTATGCTCTTCACTATGCTGCTGTGTATTGCGATCCAAAGGTTGTGAGTGAGTTGCTGAGCTTGGATACGGCTGATCTCAACCTTAGGAACTCGCGAGGGTACACCGTCCTTCATGTGGCTGCAAGGCGTAAGGACCCGTCAGTTATCGTGGGTCTGCTGAACAAGGGAGCTTGTGTATCTGACACTACGTTGGATGGGCAGACAGCTGTCACAATCTGCAGGAGGCTGACAAGGCCAAAAGATTACAACGAGCCCACGCCTCAGGGGCAGGAATGTAATAAAGACAGGTTGTGCATTGACGTGTTGGAGAGAGAGATGAGGAGGAAACCGTTGGACGGGAATATATCAATCTCTTCTGCGGTTGTGGCTGATGATTTGCACATGAGACTGCTTTTCCTTGAAGATAGAGGTGGTTTATTTACTTATTTATTTATATTCGTTGTAGTATTTATTTTGGCAGTGGCATTTGCACGGTTATTATTTCCGAGAGAAGCACGTTTGGCAATGGAGATAGCACAGGCAAATTCAACCTTGGAGTTTGCCGGTCTTTTAGCATCAAGAGGCTCGTCTGGGAATTTGAGGGAGGTTGATTTGAATGAAATACCTTCTGAGCAAATTAAAAGGCTCCTATCAAGACTACAAGCCCTTCAAAAAACAGTGGAGACAGGTAGACGTTTCTTCCCGAATTGCTCGGAGGTTCTTGATAAGATCTTGGAAGACGACATGCCCGATGTATTTTTCTTGGACAAAGGCTCTCCTGAAGAACAAGAGATGAAGAAAACGCGGTTCATGGAACTCAAGGAGGACGTTATGAAGGCATTTGACAAAGACAAAGCTGAGAACAAGTGGGTGGGTTTTTCAGCATCCTCCTCTTCCTCCTCTTCCCCGAAAGGGGTTGATGTAAATCCCAAGGTTAAGAAAAGACGTTAA

Network for GWHGAAZE001725

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00651.32	BTB	60	179	5.50E-12
PF11900.9	DUF3420	225	266	2.90E-10
PF12796.8	Ank_2	273	351	4.40E-07
PF12313.9	NPR1_like_C	366	436	6.00E-22
PF12313.9	NPR1_like_C	446	585	9.60E-58
PF00320.28	GATA	33	59	2.40E-09
PF13919.7	ASXH	303	404	2.10E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	TRAF
Transcription Factors Family	TF

KEGG pathway

KO	Enzyme	pathway	mapID
K14508	NPR1	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0008270	molecular_function	zinc ion binding
GO:0043565	molecular_function	sequence-specific DNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.978
	SRR3591706	second leaf	14.817
	SRR3591707	mature leaf	39.738
	SRR3591708	Shoot apex	20.552
	SRR3591709	Stem	41.311
	SRR3591710	White floral bud	18.253
	SRR3591711	White flower	38.670
	SRR3591712	Green floral bud	12.960
	SRR3591713	Yellow flower	22.758
SRP173429	SRR8316895	Juvenile bud stage	8.307
	SRR8316896	Juvenile bud stage	10.636
	SRR8316897	Juvenile bud stage	2.949
	SRR8316894	Third green stage	5.442
	SRR8316900	Third green stage	9.102
	SRR8316901	Third green stage	13.062
	SRR8316898	Complete white stage	5.744
	SRR8316899	Complete white stage	25.214
	SRR8316903	Complete white stage	8.245
	SRR8316902	Silver flowering stage	8.027
	SRR8316904	Silver flowering stage	10.354
	SRR8316905	Silver flowering stage	5.377
	SRR8316906	Gold flowering stage	22.131
	SRR8316907	Gold flowering stage	16.267
	SRR8316908	Gold flowering stage	24.996
SRP132670	SRR6706286	Control	14.194
	SRR6706287	Light intensity 50%	13.624
	SRR6706288	Light intensity 20%	13.056
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.756
	CNS0095593	Slightly white alabastrum(diploid) 2	6.659
	CNS0095594	Slightly white alabastrum(diploid) 3	7.345
	CNS0095595	Whole white alabastrum(diploid) 2	6.089
	CNS0095596	Whole white alabastrum(diploid) 3	5.188
	CNS0095597	Whole white alabastrum(diploid) 4	5.100
	CNS0095598	Silvery flower (diploied) 1	16.894
	CNS0095599	Silvery flower (diploied) 2	10.703
	CNS0095600	Silvery flower (diploied) 3	17.464
	CNS0095601	Golden flower (diploid) 1	13.633
	CNS0095602	Golden flower (diploid) 2	24.326
	CNS0095603	Golden flower (diploid) 3	22.884
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.809
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.444
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.303
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.340
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.931
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.615
	CNS0095610	Silvery flower (diploied) 1	24.764
	CNS0095611	Silvery flower (diploied) 2	28.998
	CNS0095612	Silvery flower (diploied) 3	19.303
	CNS0095613	Golden flower (tetraploid) 1	18.060
	CNS0095614	Golden flower (tetraploid) 2	25.501
	CNS0095615	Golden flower (tetraploid) 3	34.844
CRA001975	CRR073297	Stem 1	21.177
	CRR073298	Stem 2	19.492
	CRR073299	Stem 3	21.642
	CRR073300	Leaf 1	16.195
	CRR073301	Leaf 2	19.392
	CRR073302	Leaf 3	19.188
	CRR073303	Juvenile bud 1	18.085
	CRR073304	Juvenile bud 2	16.170
	CRR073305	Juvenile bud 3	22.014
	CRR073306	Third green 1	5.696
	CRR073307	Third green 2	6.069
	CRR073308	Third green 3	8.630
	CRR073309	Second white 1	4.806
	CRR073310	Second white 2	5.076
	CRR073311	Second white 3	3.797
	CRR073312	Silver flowering 1	5.085
	CRR073313	Silver flowering 2	4.371
	CRR073314	Silver flowering 3	4.766
	CRR073315	Gold flowering 1	42.898
	CRR073316	Gold flowering 2	56.040
	CRR073317	Gold flowering 3	45.520
	CRR073318	Tawny withering 1	34.729
	CRR073319	Tawny withering 2	28.601
	CRR073320	Tawny withering 3	24.501