Gene detail

Detail information of GWHGAAZE001781

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN73739.1	4.13953E-76	hypothetical protein VITISV_023236 [Vitis vinifera]
Swissprot	tr\|Q9ZTK5\|DAT_CATRO	2E-50	Deacetylvindoline O-acetyltransferase
trEMBL	tr\|A5ASQ5\|A5ASQ5_VITVI	2E-76	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN73739.1}
TAIR10	AT3G26040.1	7E-47	HXXXD-type acyl-transferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	60575851	60576876	-
GWHAAZE00000001	mRNA	60575851	60576876	-
GWHAAZE00000001	exon	60575851	60576876	-
GWHAAZE00000001	CDS	60575851	60576876	-

Transcript Sequence
>GWHTAAZE001785 ATGTATCAGTTCAATCCTTGGATATACATGCCCGTGATTCTGTTCTACCCAATCAATGATTATGATAGCCCACAAAAAATTGCTGACAAGTCACTTCGACTGAAGCGCTCTTTATCAGAGACGCCAACTCAGTACTACCCATTTGCCGGAAGGCTAATTTCTGAAAATTGCATTCATTGTAACGACGATGGGGTTGAATATGAAGAAGCACAACTAGAATGCAGAATGTCTGCAGTTGTAGACGAGCCTGACGATGTAGCTCTAAAGATACTCCTAAGAGATGGTTTAGCCTGGAGTTACTTGAATTATGATTCTGGTCTAGTAGTTGTTCGCACTAACATCTTTGACTGTGGTGGAATGGCAATTGTTGTGTGCTTGTCGCACAAGGTTGCCGATGCGTGCACAATATGCAATTTCTTGATTTATTGGGCTGCAGTGTCACGTCCATCAGGTGAACAAGTGTCTCCTCATTTCATTTCTTCACCTCCAAATGATTCAGTTACTTTGCCTGAATATTCGCACAAGAACAAGCATTGGGTGACTAGGAGGTTTGTGTTTAACAACTCAAAAATAGCGTGTTTAAAGACCATGGTTGCCAAAACAGGAGTTCAAAATCCCACCCGGGTCGATGTTATCACCGCATTGCTTTACAAATGTGCCGTGGCTGCTGCTAGAGAAAATGTAGGTTTGTTCGAGCCAACTTATTTGAGTCACTTGGTGAATGTGCGACCTAAGCTAGTTCCACCATTGCCTGAAACATTCGTAGGAAATTTGTACTGGAAAATTACTGTACGAACTAGGGATGAGACCGAGGCAATTGTAAATGTTTTGAGTGACAAAATCAGGAAAGCGAAGATGCAAGTTAAGGGCTTAAAAAGCCTTGATGAGATTGAAGACTTGTCAAATCCCGAAGAATTTGTTAATTACGAGGAGTATTTGTGCAGTAGCGTGTGTGGGTTCCCATTTCACAAGGCTGATTTTGGGTGGGGAAAGCCTGTTAGATTGAGTTTGGAGGCGCTTCGTTGA

Network for GWHGAAZE001781

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02458.16	Transferase	5	334	8.20E-52
PF00176.24	SNF2_N	48	430	1.90E-66
PF13923.7	zf-C3HC4_2	469	506	1.50E-07
PF00271.32	Helicase_C	619	718	5.90E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding
GO:0005524	molecular_function	ATP binding
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.106
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.020
	SRR3591713	Yellow flower	0.095
SRP173429	SRR8316895	Juvenile bud stage	0.265
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.079
	SRR8316901	Third green stage	0.019
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.039
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.067
	SRR6706287	Light intensity 50%	0.100
	SRR6706288	Light intensity 20%	0.238
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.271
	CNS0095593	Slightly white alabastrum(diploid) 2	0.167
	CNS0095594	Slightly white alabastrum(diploid) 3	0.029
	CNS0095595	Whole white alabastrum(diploid) 2	0.093
	CNS0095596	Whole white alabastrum(diploid) 3	0.081
	CNS0095597	Whole white alabastrum(diploid) 4	0.123
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.039
	CNS0095602	Golden flower (diploid) 2	0.161
	CNS0095603	Golden flower (diploid) 3	0.046
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.034
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.160
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.335
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.076
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.040
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.181
	CNS0095612	Silvery flower (diploied) 3	0.033
	CNS0095613	Golden flower (tetraploid) 1	0.048
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.050
CRA001975	CRR073297	Stem 1	0.380
	CRR073298	Stem 2	0.207
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.378
	CRR073301	Leaf 2	0.290
	CRR073302	Leaf 3	0.159
	CRR073303	Juvenile bud 1	0.412
	CRR073304	Juvenile bud 2	0.100
	CRR073305	Juvenile bud 3	0.228
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.102
	CRR073317	Gold flowering 3	0.082
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.279
	CRR073320	Tawny withering 3	0.000