Gene detail

Detail information of GWHGAAZE001810

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP06174.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SHJ5\|GPAT1_ARATH	0	Glycerol-3-phosphate acyltransferase 1
trEMBL	tr\|A0A068UDD0\|A0A068UDD0_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_19 {ECO:0000313\|EMBL:CDP06174.1}
TAIR10	AT1G06520.1	2E-171	glycerol-3-phosphate acyltransferase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	61868859	61872200	-
GWHAAZE00000001	mRNA	61868859	61872200	-
GWHAAZE00000001	exon	61868859	61869737	-
GWHAAZE00000001	exon	61871472	61872200	-
GWHAAZE00000001	CDS	61871472	61872200	-
GWHAAZE00000001	CDS	61868859	61869737	-

Transcript Sequence
>GWHTAAZE001814 ATGGTTTTCTCCATGGTACTTGTGAAGCTAGCAGACTGGCTAATCTACCAGCTATTAGCCAACTCATTTTATAAAGCAGCAATAAAGCTTAAAAACTATAGCTTCTTCCTAAGGACAAACAACCCACTAAAGTCACAGCCCCAATCCCTCTATCCTCCCCTCACCAAATGCACCCTAGCAAATAGAACCACCCAAACATTGGTCTGTGACATAAACAAAACCCTCCTTAGGTCACAGTCATTCTTCCCTTACTTCATGCTTGTTGCCTTTGAAGCTGGTAGCATACTCAGAGCATTCCTCCTCCTGTCAACCTATCCTCTACTCTTCCTCCTTGACCATGATCTAAAGTTGAGGGCAATGATCTTTATCACATTTTGTGGGCTTAAAGTTAAGGACATGGAGAGTGTGGGAAGGGCAGTTTTGCCAAAGTTTTATTTGGAGGACATGAATTTGAAGGCTTATGAGATTTTTAGGGCTTGTGGGTGTAGGGTAGTCTTTACAAGTGTCCCTAGAGTTATGATTGAAGGGTTTCTTAAGGAATATTTGGGTGTTGATTTTGTTGGAGGCACAGAGTTGCATACCTCTAGGGGTTATTTTAGTGGGCTTGTGGATAGTAGTGGAGTGCTTGTGAAGCATAGAGCTCTAAAGGAGTTTTATGGTGAAAGAAGGCCTGATATTGGAATTGGGAGTTCTGCTCTTCATGATCAACTTTTTATCTCTCTATGCAAGGAAGCATATGTGGTGAACAAAGAAGATACCAAAAACAATGGGAACTCAAAAATGCCGAGAGAAAAATACCCAAAGCCACTGGTTTTTCATGATGGCAGACTTGCATTCTTCCCCACACCACTAGCAACCCTCACGATGTTCATCTGGCTCCCTTTGGGCATACCCCTATCAATCTTCAGGCTCTTAATAGGGATCTACCTACCCTACAACCTAGCCCTATTCTTTGGTTGTTTAAGTGGGGTACGCATAAAACTCAAAGGAACTGACCCAAAAAGGTCCCACAAAAACAAGGGTGTCCTATATGTATGCACCCATAGGACACTTCTAGACCCAGTCTTTTTAAGTACATCCCTAAAAAAGCCCTTAACTGCAGTCACATATAGTTTGAGCAAAGTGTCTGAAATTATTTCACCTATCAAGACTGTTAGGCTCACCAGGGATAGGACACAAGATGGTGCTACCATGGAGAAATTATTGGGTGAGGGTGACCTTGTGGTGTGCCCTGAGGGGACCACTTGTAGGGAGCCCTATTTGTTGAGGTTTAGCTCACTCTTTGCTGAGCTGGCTGATGAGATTGTACCCGTGGCAATGGATACACGTGTCACCATGTTCTATGGGACCACCGCCAGTGGGCTTAAATGTTTGGACCCACTTTTTTTCTTGATGAACCCTAGGCCCACTTATTGGGTTCACATACTTGGGAAGGTGCCCTTGGAGCTAACGTGCGCAGGGGGAAGGTCTAGCCATGAGGTGGCAAATTATATACAGAGGCAATTAGGTGAGGCTTTGGGGTTTGAGTGTACTACACTTACAAGGAGGGATAAGTATTTGATGCTTGCTGGAAATGAAGGGGTGGTGCAGGATAAGAGAAAGAAGTGA

Network for GWHGAAZE001810

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12710.8	HAD	68	229	3.90E-09
PF01553.22	Acyltransferase	332	435	5.30E-08
PF00704.29	Glyco_hydro_18	31	280	5.00E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01183	E3.2.1.14	Metabolic pathways	map01100
		Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Amino sugar and nucleotide sugar metabolism	map00520
		Glycerolipid metabolism	map00561
		Glycerophospholipid metabolism	map00564

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0016746	molecular_function	transferase activity, transferring acyl groups
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.527
	SRR3591707	mature leaf	11.383
	SRR3591708	Shoot apex	0.269
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.097
SRP173429	SRR8316895	Juvenile bud stage	0.153
	SRR8316896	Juvenile bud stage	0.166
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.042
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.085
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.064
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.099
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.260
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.424
SRP132670	SRR6706286	Control	0.032
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.137
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.001
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.084
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.210
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.144
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.109
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.002
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.129
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.024
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.005
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.187
	CRR073316	Gold flowering 2	0.651
	CRR073317	Gold flowering 3	0.166
	CRR073318	Tawny withering 1	0.059
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000