Gene detail

Detail information of GWHGAAZE001904

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	H2DH21.1C7A29_PANGI	0	RecName: Full=Cytochrome P450 CYP72A219; AltName: Full=Cytochrome P450 CYP72A129 [Panax ginseng]
COG	YP_004448498.1	3E-54	monooxygenase
Swissprot	tr\|H2DH21\|C7A29_PANGI	0	Cytochrome P450 CYP72A219
trEMBL	tr\|A0A022QUQ9\|A0A022QUQ9_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU31636.1}
TAIR10	AT3G14690.1	0	cytochrome P450, family 72, subfamily A, polypeptide 15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	64233983	64245237	+
GWHAAZE00000001	mRNA	64233983	64245237	+
GWHAAZE00000001	exon	64233983	64234259	+
GWHAAZE00000001	exon	64242481	64242701	+
GWHAAZE00000001	exon	64243369	64243616	+
GWHAAZE00000001	exon	64243734	64244118	+
GWHAAZE00000001	exon	64244812	64245237	+
GWHAAZE00000001	five_prime_UTR	64233983	64233985	+
GWHAAZE00000001	CDS	64233986	64234259	+
GWHAAZE00000001	CDS	64242481	64242701	+
GWHAAZE00000001	CDS	64243369	64243616	+
GWHAAZE00000001	CDS	64243734	64244118	+
GWHAAZE00000001	CDS	64244812	64245237	+

Transcript Sequence
>GWHTAAZE001908 AATATGGAGATAATATTGTATATGATTGGAGTTTGTAGTACAATTTATGTGGGAATATTGGCATGGAGAGTGTCGAATTGGGTGTGGTTAAGGCCAAGGAAGGTGGAGAAGTACTTGAGAGAACAAGGTCTAAAGGGAACTTCATACAGGCTACTTTTTGGAGACTTGAAAGAGAAGTCCCTCATGCGGAAAGAAGCCAAAACCAAGCCCGTCAATCTCTCCGACGACGTCGCTCCTCGTGTCATGCCCTTCATCCACAAATCCTTTACCAACTATGGTAAGAATTTCTTTACATGGCTTGGACCAAAAGCAAATGTGCATATAATGGACCCTGATCTTATAAAGGACATATTGACTAAGAATAATATTTTTCAAAAGCCCAGGGGTGGAAATCCACTGGGCAGGTTGCTGGCAACTGGGCTTGTTGATTATGATGGTGACAAATGGACTAAACACAGAAAAATAATCAATCCAGCTTTCCATCTTGAGAAGCTCAAGTGTATGCTGCCAGTCTTTAAGTTGAGTTGTAGTGAGATGATTGGAAAATGGGAGGAAAGAGTACTCGAAAAAGGGTCGTCGTGTGAGTTGGATGTGTATCCTTACCTTCAAACATTGACTAGCGATGTGATTTCACGGACAGCATTTGGCAGCAGCTACGAAGAGGGAAGAAGAATATTTGAACTTCAAACAGAACAAGCTGAGCTAGTAATTCAGGCTATCCAGACAGTTTATATTCCTGGATCTAGGTTTTTGCCCACAAAGAGATTCAATAAGATGAAGGAGATTGAGAAACAAGTTCAAGCTTCAATAAGGGGAATCATTAATAAAAGAGTTAAAGCAATGGAAGCTAGAGAACCAAGTCAAGATGACTTATTGGGTATACTATTGGAATCCAATTTCAGAGAGATTCAAGAACATGGAAATAAAAGCTATGGAATGAATATTCATGACGTTGTTGAAGAGTGCAAGCTATTCTACTTCGCTGGGCAGGAGACTACGTCTAGTTTGCTTGTGTGGACGATGATTCTACTGAGTCAATACCCATCCTGGCAAACTCGTGCCAGGGAAGAGGTTTTTCAGGTCTTTGGGGATACCAAACCAGATTTTGATGGCTTGAATCGCCTGAAAATTGTAAACATGATTTTTAACGAGGTTCTAAGGTTATACCCGCCTATAGTTACACTAAGTCGAACTATTCACGAGGAAACTAAAATAGGAGAAATATCCATACCAGCTGAATCAATTCTCTCATTACCAATACTCTTAATTCATTATGACCACGAACTATGGGGCGATGATGCTAAGGAGTTCAAACCAGAGAGATTTGCTGAAGGAGTATCAAAAGTAACGAAGGGCCAAGTTTCATATTTCCCGTTTAGCTGGGGACCAAGGATCTGCATTGGGCAAAATTTTGCAATGTTAGAAGCTAAAATGGCAATTGCTATGATACTACAACGCTTCGCCTTCGTGCTTTCGCCATCCTATGCACATGCTCCTCACACAATCATAACTCTTCAGCCGCAACTTGGTGCTCATTTAATTCTACAAAAGTTGTAG

Network for GWHGAAZE001904

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	84	492	9.80E-85
PF00069.26	Pkinase	3	63	3.20E-11

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE11

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0006468	biological_process	protein phosphorylation
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.467
	SRR3591706	second leaf	0.973
	SRR3591707	mature leaf	1.940
	SRR3591708	Shoot apex	0.395
	SRR3591709	Stem	0.861
	SRR3591710	White floral bud	2.467
	SRR3591711	White flower	8.509
	SRR3591712	Green floral bud	2.490
	SRR3591713	Yellow flower	6.505
SRP173429	SRR8316895	Juvenile bud stage	0.359
	SRR8316896	Juvenile bud stage	1.800
	SRR8316897	Juvenile bud stage	1.283
	SRR8316894	Third green stage	0.265
	SRR8316900	Third green stage	1.731
	SRR8316901	Third green stage	1.609
	SRR8316898	Complete white stage	0.849
	SRR8316899	Complete white stage	1.873
	SRR8316903	Complete white stage	1.574
	SRR8316902	Silver flowering stage	5.665
	SRR8316904	Silver flowering stage	8.670
	SRR8316905	Silver flowering stage	4.542
	SRR8316906	Gold flowering stage	10.630
	SRR8316907	Gold flowering stage	9.706
	SRR8316908	Gold flowering stage	11.371
SRP132670	SRR6706286	Control	0.808
	SRR6706287	Light intensity 50%	1.062
	SRR6706288	Light intensity 20%	0.822
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.566
	CNS0095593	Slightly white alabastrum(diploid) 2	2.420
	CNS0095594	Slightly white alabastrum(diploid) 3	3.833
	CNS0095595	Whole white alabastrum(diploid) 2	4.089
	CNS0095596	Whole white alabastrum(diploid) 3	1.424
	CNS0095597	Whole white alabastrum(diploid) 4	1.595
	CNS0095598	Silvery flower (diploied) 1	3.240
	CNS0095599	Silvery flower (diploied) 2	3.919
	CNS0095600	Silvery flower (diploied) 3	3.887
	CNS0095601	Golden flower (diploid) 1	1.585
	CNS0095602	Golden flower (diploid) 2	2.843
	CNS0095603	Golden flower (diploid) 3	3.346
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.691
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.037
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.321
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.732
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.776
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.641
	CNS0095610	Silvery flower (diploied) 1	2.802
	CNS0095611	Silvery flower (diploied) 2	1.366
	CNS0095612	Silvery flower (diploied) 3	0.878
	CNS0095613	Golden flower (tetraploid) 1	0.931
	CNS0095614	Golden flower (tetraploid) 2	4.260
	CNS0095615	Golden flower (tetraploid) 3	1.029
CRA001975	CRR073297	Stem 1	0.775
	CRR073298	Stem 2	0.846
	CRR073299	Stem 3	1.051
	CRR073300	Leaf 1	0.773
	CRR073301	Leaf 2	0.755
	CRR073302	Leaf 3	0.150
	CRR073303	Juvenile bud 1	0.238
	CRR073304	Juvenile bud 2	0.856
	CRR073305	Juvenile bud 3	0.339
	CRR073306	Third green 1	1.444
	CRR073307	Third green 2	1.519
	CRR073308	Third green 3	1.198
	CRR073309	Second white 1	1.212
	CRR073310	Second white 2	2.742
	CRR073311	Second white 3	0.997
	CRR073312	Silver flowering 1	0.840
	CRR073313	Silver flowering 2	0.237
	CRR073314	Silver flowering 3	0.517
	CRR073315	Gold flowering 1	4.003
	CRR073316	Gold flowering 2	10.013
	CRR073317	Gold flowering 3	1.725
	CRR073318	Tawny withering 1	1.885
	CRR073319	Tawny withering 2	1.076
	CRR073320	Tawny withering 3	1.639