Gene detail

Detail information of GWHGAAZE001921

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006348901.1	0	PREDICTED: 11-oxo-beta-amyrin 30-oxidase-like isoform X1 [Solanum tuberosum]
COG	YP_004674946.1	1E-50	cytochrome P450
Swissprot	tr\|H2DH21\|C7A29_PANGI	0	Cytochrome P450 CYP72A219
trEMBL	tr\|M1BGG1\|M1BGG1_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400044607}
TAIR10	AT3G14690.1	6E-144	cytochrome P450, family 72, subfamily A, polypeptide 15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	64763357	64767949	-
GWHAAZE00000001	mRNA	64763357	64767949	-
GWHAAZE00000001	exon	64763357	64763785	-
GWHAAZE00000001	exon	64764690	64765074	-
GWHAAZE00000001	exon	64767283	64767527	-
GWHAAZE00000001	exon	64767726	64767949	-
GWHAAZE00000001	five_prime_UTR	64767897	64767949	-
GWHAAZE00000001	CDS	64767726	64767896	-
GWHAAZE00000001	CDS	64767283	64767527	-
GWHAAZE00000001	CDS	64764690	64765074	-
GWHAAZE00000001	CDS	64763357	64763785	-

Transcript Sequence
>GWHTAAZE001925 GTGTAGGTAAAGCTTCGTTCATATGGTTTGGCTGGACACCAAGGGTGCTGATCATGGACACTAATCTTATAAAAGAAGTCTTTCTAAAGATTCATAGTTTTCAAAAGCAAAAAACAAGTCCCTTAGTGAAGTTGTTCATAAATGGATTAGCAATCTATGAGGGGGAAGTTTGGGAGAAACATAGAAAAATCATCAACCCTGCTTTCCATCAAGAAAAATTGAAGCATATGCTTCCGGCATTTTACTTGAGTTGCAGTGAGATGGTGAATAAATGGGAGAAGTTGGTCTCGACAATGGGGTCATGTGAGTTTGACGTTTGGCCCTATATAGAAACCTTTACGAGTGATGTAATATCGCGTACCTCGTTTGGCAGTAGCTATGAAGAAGGGAAAATGATATTTGAACATCAGAAAGAACTCGCTGAGCTTGTGGGTCAGGTTTCACAGTCAGTATACATTCCAGGATGGAGGTATTTACCAACTAAGAATAACAAAAGGATGAGGAAACTTGCCCATGAAATTAAATTCTTGATCAGGAGTATAATTGACAACAAAATGAAGACAATGAAGCATGGTGAAGATCGCAATGAAGACTTATTGGGCATATTATTGGAATCAAATTTCAAAGAAATCCAACCTCATGAAAACGAGAGTGATGCATTGAGCATTAGCGAAGTTATCGAAGAGTGCAAGCAATTCTATTTTGCGGGGCAAGCAACTACTTCATTATTGCTTGTATGGACAATGTTTTTATTGAGCATTCATCCAGATTGGCAAGAACGTGCTAGAGAAGAGGTCATGCAAGTATTTGGAAATGAAAAGCCGGATTTTGAGGGTTTCAATCGTCTAAAAATTGTTAGCATGATTTTGCATGAAGTTTTAAGGTTATACCCACCTTCAGTCATAATCCTTCGAAATGTTGAAAATGAAACCATCTTAGGAGAAATATCGCTGCCAGCAGGGGTGCAGGTCATGATACCAACAATGCTACTTCACCGCAATCAGGAAATATGGGGTGATGATGCTATGGAGTTTAATCCGGAGAGATTTTCTGAAGGTGTGTCGAAGGCAACAAAGGGGCGAATCGCATTTTTCCCATTTGGATGGGGATCTCGAATATGCATTGGGCTGAACTTTGCAATGCTTGAAGCGAAAATGGCTATGGCTATGATTTTACAAAGATTTTCTTTTGAGCTTTCATCAACATATGTCCATGCTCCCCATACTTCTGTATTACTTGAACCCCAATATGGTGTTCAATTGATTCTGCACACATTAAACTAG

Network for GWHGAAZE001921

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0043	Transcription factor B3 family Transcription factor B3

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12854.8	PPR_1	155	185	4.00E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.206
	SRR3591706	second leaf	0.120
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	1.884
	SRR3591709	Stem	0.059
	SRR3591710	White floral bud	4.162
	SRR3591711	White flower	1.735
	SRR3591712	Green floral bud	10.330
	SRR3591713	Yellow flower	0.830
SRP173429	SRR8316895	Juvenile bud stage	4.976
	SRR8316896	Juvenile bud stage	6.309
	SRR8316897	Juvenile bud stage	1.238
	SRR8316894	Third green stage	4.319
	SRR8316900	Third green stage	33.030
	SRR8316901	Third green stage	26.803
	SRR8316898	Complete white stage	8.715
	SRR8316899	Complete white stage	39.382
	SRR8316903	Complete white stage	9.843
	SRR8316902	Silver flowering stage	0.311
	SRR8316904	Silver flowering stage	0.247
	SRR8316905	Silver flowering stage	0.020
	SRR8316906	Gold flowering stage	0.406
	SRR8316907	Gold flowering stage	0.343
	SRR8316908	Gold flowering stage	0.188
SRP132670	SRR6706286	Control	12.857
	SRR6706287	Light intensity 50%	14.494
	SRR6706288	Light intensity 20%	17.237
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.271
	CNS0095593	Slightly white alabastrum(diploid) 2	12.743
	CNS0095594	Slightly white alabastrum(diploid) 3	14.574
	CNS0095595	Whole white alabastrum(diploid) 2	19.720
	CNS0095596	Whole white alabastrum(diploid) 3	25.905
	CNS0095597	Whole white alabastrum(diploid) 4	27.001
	CNS0095598	Silvery flower (diploied) 1	1.257
	CNS0095599	Silvery flower (diploied) 2	2.500
	CNS0095600	Silvery flower (diploied) 3	5.868
	CNS0095601	Golden flower (diploid) 1	1.336
	CNS0095602	Golden flower (diploid) 2	0.833
	CNS0095603	Golden flower (diploid) 3	1.080
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.422
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.594
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.061
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.994
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.098
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.679
	CNS0095610	Silvery flower (diploied) 1	0.696
	CNS0095611	Silvery flower (diploied) 2	0.808
	CNS0095612	Silvery flower (diploied) 3	0.715
	CNS0095613	Golden flower (tetraploid) 1	0.104
	CNS0095614	Golden flower (tetraploid) 2	0.383
	CNS0095615	Golden flower (tetraploid) 3	0.103
CRA001975	CRR073297	Stem 1	3.511
	CRR073298	Stem 2	2.922
	CRR073299	Stem 3	1.347
	CRR073300	Leaf 1	9.898
	CRR073301	Leaf 2	7.870
	CRR073302	Leaf 3	9.717
	CRR073303	Juvenile bud 1	7.249
	CRR073304	Juvenile bud 2	11.381
	CRR073305	Juvenile bud 3	7.174
	CRR073306	Third green 1	0.049
	CRR073307	Third green 2	0.068
	CRR073308	Third green 3	0.441
	CRR073309	Second white 1	0.024
	CRR073310	Second white 2	0.331
	CRR073311	Second white 3	0.041
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000