Gene detail

Detail information of GWHGAAZE001933

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	H2DH21.1C7A29_PANGI	2.8487E-103	RecName: Full=Cytochrome P450 CYP72A219; AltName: Full=Cytochrome P450 CYP72A129 [Panax ginseng]
COG	YP_001522424.1	3E-12	cytochrome P450 family protein
Swissprot	tr\|H2DH21\|C7A29_PANGI	1E-105	Cytochrome P450 CYP72A219
trEMBL	tr\|A0A022RTW3\|A0A022RTW3_ERYGU	7E-101	Uncharacterized protein {ECO:0000313\|EMBL:EYU43426.1} (Fragment)
TAIR10	AT3G14690.1	7E-71	cytochrome P450, family 72, subfamily A, polypeptide 15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	65036618	65044626	+
GWHAAZE00000001	mRNA	65036618	65044626	+
GWHAAZE00000001	exon	65036618	65036912	+
GWHAAZE00000001	exon	65042746	65042966	+
GWHAAZE00000001	exon	65044375	65044626	+
GWHAAZE00000001	CDS	65036618	65036912	+
GWHAAZE00000001	CDS	65042746	65042966	+
GWHAAZE00000001	CDS	65044375	65044626	+

Transcript Sequence
>GWHTAAZE001937 ATGGAGATTGTACTAAACTACTACTACTCCTTGATTGCAATATGCATATGTATTAGTATTATATATGTAGGAATATTGGGATGGAGAGTGTTGAATTGGGTGTGGTTAAGTCCACGGAAGACGGAGGTGTACCTCAGAGCTCAAGGTGTCAATGGAAATCCCTACAGGCTACTAGTTGGAGACGTAAAAGAGATTTCCCTTATTAGAAAAGAAGCCAATCTCAACCCCATAACTTTCTCCGACGACGTCGTTCCACGCCTTATGCCCTTTGTCCACAAGTCCTTCCAAAAATACGGTAAGAAATTTTTTGTATGGCTTGGACCAAGACCAATGGTGCATATAATGGATCCTGATGTAATAAAGGAGGTGATGACTAAGATTAATCAGTTTCCAAAGCCCAAGGGAGGAAACCCATTATCCAGGTTGCTAGCAACTGGACTTGTATCCTATGAGGGTGACAAATGGACTAAACACAGAAAAATTATCAACCCTGCTTTCCATCTCGAGAAACTCAAGTGTATGCTTCCGGCCTTTAACTTGAGTTGTAGTGAGATGATAGAAAAATGGGAGGAAAGAGTACTTGAGAAAGGGTTGTCATGCGAGTTGGATGTGTGGCCTTACCTTCAAACATTAACCAGCGATGTGATTTCCCGAACAGCATTTGGAATTAGTTATGAAGAAGGAAGAAGGATATTTGAACTTCAAACAGAACAAGCTAAATTAGTAATGCAGGCTGGACAATCAATTTATATCCCAGGATCCAGGTAA

Network for GWHGAAZE001933

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0176	GO:0020037 heme binding GOslim:molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GOslim:molecular_function GO:0005506 iron ion binding GOslim:molecular_function GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity GOslim:molecular_function GO:0004497 monooxygenase activity GOslim:molecular_function GO:0055114 oxidation-reduction process GOslim:biological_process

Module ID

Function Annotation

CFinderModule0176

GO:0020037 heme binding GOslim:molecular_function
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GOslim:molecular_function
GO:0005506 iron ion binding GOslim:molecular_function
GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity GOslim:molecular_function
GO:0004497 monooxygenase activity GOslim:molecular_function
GO:0055114 oxidation-reduction process GOslim:biological_process

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	90	236	3.00E-22
PF01501.21	Glyco_transf_8	58	316	9.40E-48

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding
GO:0004497	molecular_function	monooxygenase activity
GO:0016757	molecular_function	transferase activity, transferring glycosyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.614
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.140
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.059
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.112
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.179
	SRR8316904	Silver flowering stage	0.090
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.029
	SRR8316907	Gold flowering stage	0.701
	SRR8316908	Gold flowering stage	0.250
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.087
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.138
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.198
	CNS0095603	Golden flower (diploid) 3	0.222
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.027
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.020
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.045
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.042
	CNS0095610	Silvery flower (diploied) 1	0.211
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.041
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.165
	CRR073307	Third green 2	0.164
	CRR073308	Third green 3	0.191
	CRR073309	Second white 1	0.536
	CRR073310	Second white 2	0.038
	CRR073311	Second white 3	3.389
	CRR073312	Silver flowering 1	0.581
	CRR073313	Silver flowering 2	0.089
	CRR073314	Silver flowering 3	0.613
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.020
	CRR073318	Tawny withering 1	0.268
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.143