Gene detail

Detail information of GWHGAAZE002012

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011082970.1	2.39419E-64	PREDICTED: F-box protein At3g07870-like [Sesamum indicum]
Swissprot	tr\|Q9SU30\|CPR30_ARATH	2E-20	F-box protein CPR30
trEMBL	tr\|A0A068V2K9\|A0A068V2K9_COFCA	5E-64	Coffea canephora DH200=94 genomic scaffold, scaffold_91 {ECO:0000313\|EMBL:CDP14709.1}
TAIR10	AT4G12560.2	5E-19	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	67124186	67125735	+
GWHAAZE00000001	mRNA	67124186	67125735	+
GWHAAZE00000001	exon	67124186	67124591	+
GWHAAZE00000001	exon	67124678	67125402	+
GWHAAZE00000001	exon	67125652	67125735	+
GWHAAZE00000001	CDS	67124186	67124591	+
GWHAAZE00000001	CDS	67124678	67125402	+
GWHAAZE00000001	CDS	67125652	67125735	+

Transcript Sequence
>GWHTAAZE002016 ATGTTGGACTATATTCCTCCGGAAGTGATGACCGAAATTATGACAAGGCTACCAATGAAGACTCTGCTTCAATGCACAAGTGTGTGCAAATCATGGTACTCTCTCATAATTTCCCCTAATTTCATCACAGCACACCTCAATCGCAACAACAATAGCAATCAAATAGTTGTTAGGTATTTCATTGCAGATAATAAGTTAACTGGGAAAGATCAGTACTCTGTGCACATAGATAATGAAGCATTTGATAAGCTTGAAACCCTTGAATTTCCATTACCTGGGTATTTTAGGATCATGGGTAGTTGTAATGGATTGATATGCTTGTCTAATCTTCACTTCATGATACTATGGAACCCGTCCGTTCGAAAGTATGTGACTCTTCCAACGCCAAGTGTTACCTATGAATCACATGGTCTTACGGTTCTGCCTGGGCCAAAGGTAGAGCTTTATGAGCTTAGCACCAGCAGCTGGCGAAATATTAATGCCGGGGACTTTAAGTATATCGTCAGTGAACGTGATCCGCAAGCGTTTTTGGATGGTGTGGTCCATTGGACCGGTAAGGAAGGAGATGGTCTTCCTAATTGGATTGTGTCGTTCGACATGGAAAATGAGGCGTTTGGTGTTATGATGGTGCCACCTAGTTTACAGCAGGAGTGTGATCTGCGTGTAGCAGTATATGGAGATTCACTTTCTTTGATTCATCTAAAAGTTGCTCACTGTCATCGTGATTGTTGCATATGGGTGATGAACGAGTATGGCATTGCAAAATCTTGGATAAAACAATTCACGATTGATCTAGATAATGGGTTTTTGGGGAGTCCATTTGGCTTTAGAGAGAATGGTGATGTTTTAATTGCTGCACTACATGGAAATGGCCTTGGAGATTTGGTTTCTTATGATCCCAAAAGCAGACAAATTAAGGATCTTGGAATATGCGGACGAGCATATGGTTTTTCCAAAGATATTTATATGGCGAGCCTAGTCTTAGTTAAGGGCTTAAGTACCATCTTGGAGAGAAGGGAAAGTTCTTGTGATGAAGTTGCTTTTGAGGGGGCGTCTCTTTTGCCAAGAGAAGATGATGAGGGTCAAGGAAACCAAAGAATGGAAGATAACGTATGTGCAAGAACATGCAGGATTTTGTTTGTCAGGGTTGCGGCTAGATTGCACAATGAAATCAAGGAATCCAAATGTCAAGAGAAGGTTGAAGAGCAGATGTAG

Network for GWHGAAZE002012

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12937.8	F-box-like	3	39	2.80E-08
PF07734.14	FBA_1	176	267	1.80E-07
PF08567.12	PH_TFIIH	42	114	3.60E-07
PF03909.18	BSD	188	237	7.40E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	BSD
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
K03141	TFIIH1, GTF2H1, TFB1	Basal transcription factors	map03022
K03141	TFIIH1, GTF2H1, TFB1	Nucleotide excision repair	map03420

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.114
	SRR3591706	second leaf	0.147
	SRR3591707	mature leaf	0.160
	SRR3591708	Shoot apex	0.094
	SRR3591709	Stem	0.080
	SRR3591710	White floral bud	0.205
	SRR3591711	White flower	0.172
	SRR3591712	Green floral bud	0.069
	SRR3591713	Yellow flower	0.106
SRP173429	SRR8316895	Juvenile bud stage	1.253
	SRR8316896	Juvenile bud stage	1.214
	SRR8316897	Juvenile bud stage	0.241
	SRR8316894	Third green stage	0.904
	SRR8316900	Third green stage	1.878
	SRR8316901	Third green stage	1.442
	SRR8316898	Complete white stage	1.042
	SRR8316899	Complete white stage	2.860
	SRR8316903	Complete white stage	1.133
	SRR8316902	Silver flowering stage	0.736
	SRR8316904	Silver flowering stage	1.287
	SRR8316905	Silver flowering stage	0.749
	SRR8316906	Gold flowering stage	0.979
	SRR8316907	Gold flowering stage	1.879
	SRR8316908	Gold flowering stage	0.082
SRP132670	SRR6706286	Control	1.287
	SRR6706287	Light intensity 50%	1.638
	SRR6706288	Light intensity 20%	1.540
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.822
	CNS0095593	Slightly white alabastrum(diploid) 2	1.194
	CNS0095594	Slightly white alabastrum(diploid) 3	1.556
	CNS0095595	Whole white alabastrum(diploid) 2	2.319
	CNS0095596	Whole white alabastrum(diploid) 3	0.780
	CNS0095597	Whole white alabastrum(diploid) 4	1.250
	CNS0095598	Silvery flower (diploied) 1	1.389
	CNS0095599	Silvery flower (diploied) 2	0.353
	CNS0095600	Silvery flower (diploied) 3	0.731
	CNS0095601	Golden flower (diploid) 1	0.791
	CNS0095602	Golden flower (diploid) 2	0.617
	CNS0095603	Golden flower (diploid) 3	0.631
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.107
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.063
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.271
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.040
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.119
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.432
	CNS0095610	Silvery flower (diploied) 1	0.172
	CNS0095611	Silvery flower (diploied) 2	0.197
	CNS0095612	Silvery flower (diploied) 3	0.109
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.017
	CNS0095615	Golden flower (tetraploid) 3	0.066
CRA001975	CRR073297	Stem 1	1.594
	CRR073298	Stem 2	2.197
	CRR073299	Stem 3	0.396
	CRR073300	Leaf 1	1.180
	CRR073301	Leaf 2	1.020
	CRR073302	Leaf 3	0.488
	CRR073303	Juvenile bud 1	0.109
	CRR073304	Juvenile bud 2	0.354
	CRR073305	Juvenile bud 3	0.145
	CRR073306	Third green 1	0.102
	CRR073307	Third green 2	0.093
	CRR073308	Third green 3	0.142
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.097
	CRR073311	Second white 3	0.200
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.378
	CRR073316	Gold flowering 2	0.318
	CRR073317	Gold flowering 3	0.025
	CRR073318	Tawny withering 1	0.666
	CRR073319	Tawny withering 2	0.724
	CRR073320	Tawny withering 3	0.489