Gene detail

Detail information of GWHGAAZE002035

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010102129.1	ATP-dependent zinc metalloprotease FTSH 2 [Morus notabilis]
COG	YP_724043.1	FtsH peptidase
Swissprot	tr\|O80860\|FTSH2_ARATH	ATP-dependent zinc metalloprotease FTSH 2, chloroplastic (Precursor)
trEMBL	tr\|W9RHR9\|W9RHR9_9ROSA	ATP-dependent zinc metalloprotease FTSH 2 {ECO:0000313\|EMBL:EXB92379.1}
TAIR10	AT2G30950.1	FtsH extracellular protease family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	67545535	67550461	+
GWHAAZE00000001	mRNA	67545535	67550461	+
GWHAAZE00000001	exon	67545535	67545942	+
GWHAAZE00000001	exon	67546056	67546715	+
GWHAAZE00000001	exon	67547283	67547596	+
GWHAAZE00000001	exon	67548827	67549067	+
GWHAAZE00000001	exon	67550228	67550461	+
GWHAAZE00000001	CDS	67545535	67545942	+
GWHAAZE00000001	CDS	67546056	67546715	+
GWHAAZE00000001	CDS	67547283	67547596	+
GWHAAZE00000001	CDS	67548827	67549067	+
GWHAAZE00000001	CDS	67550228	67550461	+

Transcript Sequence
>GWHTAAZE002039 ATGGCTACATCATCTGCATGCATTTTGGGAAATGGTTTATCGACCAAATTAGGTGTGAGCAGGGATTTTTACACCAGGGATCTCTTCCGTTCCTCATCCCTTCCATCACTTAGCAAGGCATCAAAAGCAGTTGTTGTAAAAGCATCATTGAAGGAAAGGCAAAATGAAGGACGAAGAAGCTTTCTAAAGTTAATGCTTGGAAATGTTGGACTCGGCATTCCTTCATTAGTAGGTGGTGGAAATGCCTATGCCGACGATGAGCAAGGGGTTTCTAACTCAAGGATGTCTTATTCTAGGTTTTTGGAGTATTTGGACAAGGACAGGGTTACTAAAGTTGACGTCTACGAAAATGGAACCATAGCTATTGTTGAGGCTATTTCTCCAGAGTTGGGTAATCGGTTGCAGAGATTTGATTGGGAATCTGGCTTTCCCTCTAATTCTTATTGGGGTCTTTTCCTTCTCTCAAGGCGTTCATCTGGAGGAATGGGTGGCCCTGGTGGGCCTGGTTTCCCTCTTCAATTTGGTCAGTCGAAAGCTAAGTTCCAAATGGAACCAAACACTGGAGTGACATTTGACGATGTTGCTGGAGTAGATGAAGCCAAGCAAGATTTCATGGAGGTTGTGGAGTTTTTGAAGAAGCCTGAGAGGTTCACAGCTGTCGGGGCCCGCATTCCTAAGGGGGTTCTTCTTGTTGGTCCTCCAGGAACTGGGAAAACCCTACTAGCCAAGGCTATTGCTGGTGAAGCTGGTGTTCCATTTTTCTCAATTTCAGGTTCGGAGTTTGTTGAGATGTTTGTGGGTGTTGGTGCCTCAAGAGTGCGTGATCTTTTCAAGAAGGCCAAGGAAAACGCTCCCTGCATTGTATTCGTGGATGAAATCGATGCAGTTGGGCGGTCAAGAGGAACGGGAATCGGAGGAGGTAATGATGAAAGAGAACAGACCCTTAATCAGCTTCTGACAGAAATGGATGGTTTTGAAGGAAACACTGGTATTATTGTAATTGCCGCAACTAATCGTGCAGACATTCTTGACTCAGCCTTATTGAGGCCAGGGCGGTTTGATAGGCAGGTATCTGTTGATGTTCCAGATGTTCGAGGAAGAACAGACATATTAAAGGTTCATGCTAGCAACAAGAAGTTTGATAGAGATGTGTCTCTTGAGGTGGTGGCCATGAGAACACCTGGTTTTAGTGGAGCAGATCTTGCAAATCTCTTAAATGAGGCTGCTATTTTGGCTGGTCGGCGTGGGAAAACAGCAATATCATCCAAAGAGATAGATGATTCAATTGATAGGATAGTAGCTGGAATGGAAGGAACAGTTATGACTGATGGTAAAAGCAAAAGTTTGGTGGCTTACCATGAAGTTGGCCATGCCATTTGCGGAACTCTTACTCCAGGGCATGATCCAGTTCAAAAGGTGACCCTAGTCCCACGTGGTCAGGCTCGGGGTTTGACCTGGTTCATACCTTCTGATGACCCGACCTTGATCTCAAAGCAGCAACTGTTTGCAAGAATTGTTGGTGGACTTGGTGGAAGAGCCGCCGAAGAAATTATCTTTGGTGAGCCCGAGGTGACTACAGGTGCTGGTGGTGATCTTCAGCAGATCACTGGTTTGGCCAAACAGATGGTGGTTACATTTGGGATGTCAGAGCTAGGGCCATGGTCACTAATGGACTCGTCGGCTCAAAGTGGCGACGTGATCATGAGAATGATGGCACGCAATTCAATGTCGGAAAAGCTGGCCGCAGATATTGATACGGCGGTGAAGAAGCTCTCAGATAGTGCATACGAGATCGCATTGTCTCAAATACAAGCCAACCGCGAAGCCAATGGACAAGATTGTAGAAGTTCTTCTTGA

Network for GWHGAAZE002035

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00004.30	AAA	228	359	1.70E-45
PF17862.2	AAA_lid_3	383	426	1.10E-11
PF01434.19	Peptidase_M41	442	609	4.40E-59

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00053	ilvC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Valine, leucine and isoleucine biosynthesis	map00290
		Pantothenate and CoA biosynthesis	map00770

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0016020	cellular_component	membrane
GO:0004222	molecular_function	metalloendopeptidase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	56.270
	SRR3591706	second leaf	106.612
	SRR3591707	mature leaf	154.404
	SRR3591708	Shoot apex	49.080
	SRR3591709	Stem	49.145
	SRR3591710	White floral bud	36.825
	SRR3591711	White flower	49.110
	SRR3591712	Green floral bud	40.860
	SRR3591713	Yellow flower	23.643
SRP173429	SRR8316895	Juvenile bud stage	35.335
	SRR8316896	Juvenile bud stage	50.917
	SRR8316897	Juvenile bud stage	28.147
	SRR8316894	Third green stage	22.427
	SRR8316900	Third green stage	65.299
	SRR8316901	Third green stage	64.542
	SRR8316898	Complete white stage	22.211
	SRR8316899	Complete white stage	63.871
	SRR8316903	Complete white stage	32.336
	SRR8316902	Silver flowering stage	15.654
	SRR8316904	Silver flowering stage	22.876
	SRR8316905	Silver flowering stage	11.868
	SRR8316906	Gold flowering stage	38.982
	SRR8316907	Gold flowering stage	36.392
	SRR8316908	Gold flowering stage	42.711
SRP132670	SRR6706286	Control	71.763
	SRR6706287	Light intensity 50%	69.027
	SRR6706288	Light intensity 20%	66.599
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	33.713
	CNS0095593	Slightly white alabastrum(diploid) 2	27.286
	CNS0095594	Slightly white alabastrum(diploid) 3	26.815
	CNS0095595	Whole white alabastrum(diploid) 2	26.304
	CNS0095596	Whole white alabastrum(diploid) 3	24.913
	CNS0095597	Whole white alabastrum(diploid) 4	28.377
	CNS0095598	Silvery flower (diploied) 1	56.363
	CNS0095599	Silvery flower (diploied) 2	52.727
	CNS0095600	Silvery flower (diploied) 3	72.127
	CNS0095601	Golden flower (diploid) 1	55.743
	CNS0095602	Golden flower (diploid) 2	79.943
	CNS0095603	Golden flower (diploid) 3	75.912
	CNS0095604	Slightly white alabastrum(tetraploid) 1	47.895
	CNS0095605	Slightly white alabastrum(tetraploid) 2	37.191
	CNS0095606	Slightly white alabastrum(tetraploid) 3	97.081
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.587
	CNS0095608	Whole white alabastrum(tetraploid) 2	30.521
	CNS0095609	Whole white alabastrum(tetraploid) 3	87.959
	CNS0095610	Silvery flower (diploied) 1	109.854
	CNS0095611	Silvery flower (diploied) 2	118.719
	CNS0095612	Silvery flower (diploied) 3	99.787
	CNS0095613	Golden flower (tetraploid) 1	45.561
	CNS0095614	Golden flower (tetraploid) 2	76.128
	CNS0095615	Golden flower (tetraploid) 3	31.722
CRA001975	CRR073297	Stem 1	85.498
	CRR073298	Stem 2	80.734
	CRR073299	Stem 3	97.679
	CRR073300	Leaf 1	80.336
	CRR073301	Leaf 2	78.725
	CRR073302	Leaf 3	66.940
	CRR073303	Juvenile bud 1	86.416
	CRR073304	Juvenile bud 2	73.297
	CRR073305	Juvenile bud 3	100.045
	CRR073306	Third green 1	25.018
	CRR073307	Third green 2	15.934
	CRR073308	Third green 3	19.692
	CRR073309	Second white 1	53.498
	CRR073310	Second white 2	47.015
	CRR073311	Second white 3	48.084
	CRR073312	Silver flowering 1	29.141
	CRR073313	Silver flowering 2	30.895
	CRR073314	Silver flowering 3	30.923
	CRR073315	Gold flowering 1	643.537
	CRR073316	Gold flowering 2	751.008
	CRR073317	Gold flowering 3	560.361
	CRR073318	Tawny withering 1	51.718
	CRR073319	Tawny withering 2	45.046
	CRR073320	Tawny withering 3	40.642