Gene detail

Detail information of GWHGAAZE002044

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002274300.1	0	PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915 [Vitis vinifera]
Swissprot	tr\|P0C043\|PP318_ARATH	4E-180	Putative pentatricopeptide repeat-containing protein At4g17915
trEMBL	tr\|F6HEG2\|F6HEG2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50608.1}
TAIR10	AT5G46680.1	1E-138	Pentatricopeptide repeat (PPR-like) superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	67783220	67784593	+
GWHAAZE00000001	mRNA	67783220	67784593	+
GWHAAZE00000001	exon	67783220	67784593	+
GWHAAZE00000001	CDS	67783220	67784593	+

Transcript Sequence
>GWHTAAZE002048 ATGGGTAGTAGATTATCAACTAGGTTATTGAATATATGTATAGCTTCTTTTTGTAAAGTCAAGCAGTTGGAGAAAGCAGAAACTGTAATAATTGATGGTATACGATTAGGAGTATTACCTGACGTGGTAACTTACAATACACTCATTTCTGCATATTGCCGTTTTGTTAGCCTCGATGCAGGTTATTCAGTTCTTTATAGAATGAGAGAAGCTGGGATAAACCCAGACGTCATTACTTACAATGCTTTGATAGCTGGTGCTTCCAAGCATAGCTTATTGTTTCAGTCCTTGGACCTGTTTGAAGAAATGCTTCGAAGAGGTATTCCTCCTGACGTGTGGACTTACAATACTTTGATGCATTGCTTTTTCATATCGGGAAAATCCGATGAGGCCAACAGGGTTTTCCAGGATATTATATTGGGCAATATATCTCCTTGTCAAGCCACGTTTAATATTATGATTAATGGCCTTTGCAAGAATGGGTGTAGTAGTGAAGCCCTTATGTTATTCAGGAACTTGCAACGACATGGATTTGTTCCCCAAATAACGACATACAATATTCTTATCAACGGGCTTTGCAAGGCCCACAGATTGGGGGCCGCAAGAAGGATCCTCAAGGAGGTTGGGGAAGCGGGTCATGTGCCAAATGCTATTACTTACACTACAGTAATGAAATGCTGCTTTAGATATAAGCTTTTCAAAGAAGGGATTGACATATTCTTTGAGATGAAGGAGAAAGGGTATACATTTGATGGTTTTGCATATTGCGCAGTCATTGCTGTTCTGGTCAGAACTGGTAGGATAGAACAGGCAAATGAGTGCATGGAGCAGATGGTCAACAATCGCATTGAGTTTGACATAGTGTCCTACAACACCTTGATTAATTTGTACTGTAGGGAAGGTAAGTTGGACAATGTCTATAAGTTGTTGGATGAAATAGAAAAATTAGGCCTTGAATGTGACAACTATACCCACACAATTTTGATAGATGGGTTGTGCAGGGCGGGTAATCTTGATAGGGCCGAACAACATATCAAGTATATGAATACTATGGGAATTGGTTCGAATTTGGTTACATTGAACTGCTTGATTGATCGGTTGTGTAAAGCTGGCCATATTGATCATGCGATAAAGGTATTCGAGTCGATGGAAGTGAAAGACTCTTTTACCTACTCTTCCTTGGTATACAATCTTTCCAAGGCTCGGAGATACCGGTGTGCATCCAAACTCCTGCTTACTTGCTTGAATAGTGGCTTGAAGATATTGAAATCTGCCCAACGGGCTCTTATTGACGGTCTTCGTGCTTCTGGGTTTACACAAGAAGCGAGGAAGGTCAAGTCAAAAATTCGCATGGCTAAGATGTTGTCCTATTGA

Network for GWHGAAZE002044

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12854.8	PPR_1	37	59	5.80E-08
PF13041.7	PPR_2	75	122	1.40E-13
PF13041.7	PPR_2	145	194	2.00E-15
PF01535.21	PPR	218	247	1.60E-05
PF01535.21	PPR	254	282	0.032
PF13041.7	PPR_2	286	334	5.90E-17
PF12854.8	PPR_1	352	384	8.00E-10
PF13837.7	Myb_DNA-bind_4	84	208	1.90E-21

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.466
	SRR3591706	second leaf	7.197
	SRR3591707	mature leaf	6.611
	SRR3591708	Shoot apex	8.445
	SRR3591709	Stem	10.455
	SRR3591710	White floral bud	5.770
	SRR3591711	White flower	7.194
	SRR3591712	Green floral bud	6.549
	SRR3591713	Yellow flower	3.619
SRP173429	SRR8316895	Juvenile bud stage	9.615
	SRR8316896	Juvenile bud stage	9.860
	SRR8316897	Juvenile bud stage	6.475
	SRR8316894	Third green stage	5.518
	SRR8316900	Third green stage	11.101
	SRR8316901	Third green stage	10.020
	SRR8316898	Complete white stage	2.946
	SRR8316899	Complete white stage	17.100
	SRR8316903	Complete white stage	8.222
	SRR8316902	Silver flowering stage	2.802
	SRR8316904	Silver flowering stage	4.395
	SRR8316905	Silver flowering stage	1.855
	SRR8316906	Gold flowering stage	6.726
	SRR8316907	Gold flowering stage	7.200
	SRR8316908	Gold flowering stage	5.168
SRP132670	SRR6706286	Control	8.040
	SRR6706287	Light intensity 50%	9.811
	SRR6706288	Light intensity 20%	10.577
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.902
	CNS0095593	Slightly white alabastrum(diploid) 2	5.027
	CNS0095594	Slightly white alabastrum(diploid) 3	4.001
	CNS0095595	Whole white alabastrum(diploid) 2	5.053
	CNS0095596	Whole white alabastrum(diploid) 3	2.590
	CNS0095597	Whole white alabastrum(diploid) 4	5.370
	CNS0095598	Silvery flower (diploied) 1	12.167
	CNS0095599	Silvery flower (diploied) 2	7.811
	CNS0095600	Silvery flower (diploied) 3	8.771
	CNS0095601	Golden flower (diploid) 1	7.636
	CNS0095602	Golden flower (diploid) 2	9.601
	CNS0095603	Golden flower (diploid) 3	10.037
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.286
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.972
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.562
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.409
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.570
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.865
	CNS0095610	Silvery flower (diploied) 1	10.360
	CNS0095611	Silvery flower (diploied) 2	11.858
	CNS0095612	Silvery flower (diploied) 3	5.934
	CNS0095613	Golden flower (tetraploid) 1	3.300
	CNS0095614	Golden flower (tetraploid) 2	5.201
	CNS0095615	Golden flower (tetraploid) 3	3.478
CRA001975	CRR073297	Stem 1	10.602
	CRR073298	Stem 2	9.322
	CRR073299	Stem 3	2.290
	CRR073300	Leaf 1	11.965
	CRR073301	Leaf 2	9.826
	CRR073302	Leaf 3	2.983
	CRR073303	Juvenile bud 1	2.306
	CRR073304	Juvenile bud 2	0.615
	CRR073305	Juvenile bud 3	3.181
	CRR073306	Third green 1	0.090
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.251
	CRR073309	Second white 1	0.529
	CRR073310	Second white 2	0.099
	CRR073311	Second white 3	0.077
	CRR073312	Silver flowering 1	0.168
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.121
	CRR073315	Gold flowering 1	1.403
	CRR073316	Gold flowering 2	4.769
	CRR073317	Gold flowering 3	1.176
	CRR073318	Tawny withering 1	6.053
	CRR073319	Tawny withering 2	4.167
	CRR073320	Tawny withering 3	2.960