Gene detail

Detail information of GWHGAAZE002053

Functional Annotation

Database	Orthologs	Annotation
Nr	AFN70424.1	phosphoenolpyruvate carboxylase [Manihot esculenta]
COG	YP_008045770.1	phosphoenolpyruvate carboxylase
Swissprot	tr\|Q9FV65\|CAPPC_FLATR	Phosphoenolpyruvate carboxylase 2
trEMBL	tr\|U5HTH1\|U5HTH1_MANES	Phosphoenolpyruvate carboxylase {ECO:0000313\|EMBL:AFN70424.1}
TAIR10	AT3G14940.1	phosphoenolpyruvate carboxylase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	68104160	68117642	-
GWHAAZE00000001	mRNA	68104160	68117642	-
GWHAAZE00000001	exon	68117562	68117642	-
GWHAAZE00000001	exon	68115625	68116016	-
GWHAAZE00000001	exon	68114843	68114927	-
GWHAAZE00000001	exon	68113381	68113603	-
GWHAAZE00000001	exon	68111937	68112040	-
GWHAAZE00000001	exon	68111744	68111831	-
GWHAAZE00000001	exon	68110576	68110730	-
GWHAAZE00000001	exon	68108743	68109266	-
GWHAAZE00000001	exon	68108004	68108478	-
GWHAAZE00000001	exon	68106922	68107308	-
GWHAAZE00000001	exon	68104160	68104459	-
GWHAAZE00000001	CDS	68117562	68117642	-
GWHAAZE00000001	CDS	68115625	68116016	-
GWHAAZE00000001	CDS	68114843	68114927	-
GWHAAZE00000001	CDS	68113381	68113603	-
GWHAAZE00000001	CDS	68111937	68112040	-
GWHAAZE00000001	CDS	68111744	68111831	-
GWHAAZE00000001	CDS	68110576	68110730	-
GWHAAZE00000001	CDS	68108743	68109266	-
GWHAAZE00000001	CDS	68108004	68108478	-
GWHAAZE00000001	CDS	68106922	68107308	-
GWHAAZE00000001	CDS	68104160	68104459	-

Transcript Sequence
>GWHTAAZE002057 ATGACTGCTGCTGGTGGTTCGAGGAACTTGGAGAAAATGTCGTCGATAGATGCGCAATTGAGGCTATTGGCACCTCGTAAGGTTCAAGACTGTTATGAGCTTTCAGCGGAGTATGAGGGCAATCTTGACCCCAATAAATTGGAAGAAATTGGAAGAGTGTTAACAAGTTTGGATGCCGGGGATTCTATTGTTGTTGCTAAGTCCTTCTCCCATATGCTTAACTTAGCTAACTTGGCTGAAGAGGTTCAGATAGCTTATAGGCGAAGGATTAAGCTGAAGAAAGGTGATTTGGCAGATGAGGCCTCTGCAACAACTGAATCGGATATTGAAGAGACCCTTAGGAGGCTTGTGGTGCAACTTAAGAAGTCCCCGCAAGAAGTTTTCGAGTCTTTAAAGAATCAGACAGTGGATTTGGTACTTACAGCGCATCCTACTCAATCTGTTCGTCGATCGTTGCTTCAGAAGCACGCAAGGATCCGGAATTGTTTGGCTCAGTTGTATGCTAAAGACATCACTCCTGATGATAAGCAGGAGCTAGATGAGGCTCTACAAAGAGAGATACAAGCTGCATTTCGAACTGATGAAATAAGGAGAACGGCACCGACTCCACAAGATGAGATGAGGGCAGGAATGAGCTACTTCCACGAGACAATATGGAAGGGAGTGCCTAAGTTCTTACGCCGTGTTGACACTGCTTTGAAGAATATAGGCATAAATGAACGCGTTCCTTACAATGCCCCTCTTATTCAATTCTCTTCTTGGATGGGTGGGGATCGTGATGGAAATCCAAGGGTGACTCCTGAAGTTACAAGGGACGTATGCTTATTAGCTAGAATGATGGCTGCAAACTTGTACTTTTCCCAGATAGAGGATCTTATGTTTGAGCTATCGATGTGGCGCTGCAGTGATGAACTTCGTGGTCGTGCTGATGAACTTCACAGGTCCTCAAAGAGAGATGCGAAACACTATATTGAGTTTTGGAAACAAGTCCCACCAAATGAGCCGTACCGTGTTATTCTTGGGGATGTGAGGGATAAGCTTTATAATACCCGTGAACGTTCTCGTCATTTGTTAGCCAATGGGACCTCTGATATTCTTGAGGAAGCAATATTTACTAATGTTGAACAGTTTCTGGAGCCACTAGAGCTCTGTTACAGATCACTCTGCTCTTGCGGTGACCGTCCTATTGCTGATGGAAGCCTTCTCGATTTCTTACGGCAAGTCTCCACCTTTGGTCTCTCCCTTGTGAGACTCGATATCCGGCAAGAATCCGATAAACACACTGATGTAATGGATGCTATTACAAGGCACCTAGAGATCGGTTCCTACCGAGAATGGTCCGAAGAACGGAGGCAACAATGGCTCTTATCCGAACTTCGGGGCAAACGCCCTCTATTCGGCCCTGATCTTCCCAAAACCGAAGAAATTGCTGATGTTTTAGACACCTTTAAAGTCATTTCCGAGCTCCCGTCTGATAACTTTGGGGCCTACATAATTTCAATGGCAACGGCCCCTTCTGATGTGCTTGCGGTTGAGCTTTTGCAACGTGAGTGCCATGTCATGAACCCGTTGAGGGTGGTCCCGTTGTTTGAAAAACTTGCTGATCTCGAGGCCGGTCCGGCTGCTGTTGCTCGTCTATTCTCAATTGATTGGTACAAAAACCGAATCAATGGCAAGCAAGAAGTCATGCTCGGGTACTCAGATTCGGGCAAGGACGCAGGCCGTCTTTCGGCTGCTTGGCAGTTATACAAGGCTCAAGAGGAGCTTGTAAAAGTGGCTAAGCAATTCGGGGTAAAGCTCACTATGTTCCATGGCCGAGGGGGGACGGTTGGAAGAGGAGGGGGTCCCACCCATCTTGCCATATTATCTCAGCCACCCGATACAATCAACGGGTCACTTAGGGTGACGGTTCAAGGGGAGGTTATTGAACAGTCTTTTGGGGAGGAGCATTTGTGTTTTAGAACGCTCCAACGTTTCACTGCAGCAACGCTGGAGCATGGCATGCATCCTCCTATATCTCCAAAACCTGAATGGCGTGCACTCTTGGATGAGATGGCAGTCGTTGCTACAAAGGAATATCGGTCCATTGTTTTCCAAGAACCCCGATTTGTGGAATACTTCCGCCTTGCAACGCCAGAGACAGAGTACGGTCGTATGAACATTGGCAGCCGTCCATCAAAACGAAAGCCAAGTGGTGGAATCGAATCACTTCGAGCAATCCCGTGGATCTTTGCGTGGACCCAAACGAGGTTCCACCTCCCGGTTTGGCTTGGGTTCGGGTCCGCATTTAAGCACGTCATCGACAAGGATATAAGAAATCTCCAAATGCTTAAGGAGATGTATAATGAATGGCCTTTCTTTAGAGTGACAATTGATTTGGTTGAGATGGTTTTTGCTAAGGGAGACCCGGGGATTGCCGCTTTGTATGACAAACTCCTAGTGTCGGAAGAATTGTGGCCATTTGGAGAGCGCCTGAGGAAGATTTATGAAGAAACTAAGAGCTTTCTCCTCCAGATTGCGGGGCACAAGGACCTTCTCGAAGGAGACCCATACTTGAAGCAGAGACTCCGGCTACGAGATGCATACATCACAACCCTCAATGTGCTCCAAGCGTACACGCTTAAGAGTATCCGAGACCCGAGCTTTGATGTGAAGGTGAGGCCACATATCTCTAAAGAGATGATAAACGAGTCGAACAAACCAGCAGCTCAGCTTCTTAAGCTCAACCCTACGAGCGAGTATGCCCCTGGCTTGGAAGACACCCTTATCCTCACCATGAAGGGTATTGCTGCTGGAATGCAAAACACTGGTTGA

Network for GWHGAAZE002053

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00311.18	PEPcase	134	937	1.10E-301

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01595	ppc	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Pyruvate metabolism	map00620
		Carbon fixation in photosynthetic organisms	map00710
		Carbon fixation pathways in prokaryotes	map00720
		Methane metabolism	map00680

Gene Ontology

GO term	Ontology	Name
GO:0006099	biological_process	tricarboxylic acid cycle
GO:0015977	biological_process	carbon fixation
GO:0008964	molecular_function	phosphoenolpyruvate carboxylase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	37.291
	SRR3591706	second leaf	33.203
	SRR3591707	mature leaf	31.779
	SRR3591708	Shoot apex	15.489
	SRR3591709	Stem	31.590
	SRR3591710	White floral bud	18.693
	SRR3591711	White flower	22.835
	SRR3591712	Green floral bud	15.218
	SRR3591713	Yellow flower	21.014
SRP173429	SRR8316895	Juvenile bud stage	8.703
	SRR8316896	Juvenile bud stage	12.180
	SRR8316897	Juvenile bud stage	5.539
	SRR8316894	Third green stage	6.665
	SRR8316900	Third green stage	21.740
	SRR8316901	Third green stage	17.882
	SRR8316898	Complete white stage	7.778
	SRR8316899	Complete white stage	34.425
	SRR8316903	Complete white stage	11.960
	SRR8316902	Silver flowering stage	4.794
	SRR8316904	Silver flowering stage	9.004
	SRR8316905	Silver flowering stage	3.503
	SRR8316906	Gold flowering stage	11.207
	SRR8316907	Gold flowering stage	10.429
	SRR8316908	Gold flowering stage	11.320
SRP132670	SRR6706286	Control	29.393
	SRR6706287	Light intensity 50%	29.265
	SRR6706288	Light intensity 20%	29.473
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.582
	CNS0095593	Slightly white alabastrum(diploid) 2	10.716
	CNS0095594	Slightly white alabastrum(diploid) 3	6.646
	CNS0095595	Whole white alabastrum(diploid) 2	9.718
	CNS0095596	Whole white alabastrum(diploid) 3	7.234
	CNS0095597	Whole white alabastrum(diploid) 4	7.768
	CNS0095598	Silvery flower (diploied) 1	12.214
	CNS0095599	Silvery flower (diploied) 2	15.543
	CNS0095600	Silvery flower (diploied) 3	45.086
	CNS0095601	Golden flower (diploid) 1	12.468
	CNS0095602	Golden flower (diploid) 2	40.413
	CNS0095603	Golden flower (diploid) 3	37.793
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.218
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.483
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.543
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.781
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.439
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.182
	CNS0095610	Silvery flower (diploied) 1	40.938
	CNS0095611	Silvery flower (diploied) 2	57.879
	CNS0095612	Silvery flower (diploied) 3	33.267
	CNS0095613	Golden flower (tetraploid) 1	15.775
	CNS0095614	Golden flower (tetraploid) 2	42.039
	CNS0095615	Golden flower (tetraploid) 3	13.784
CRA001975	CRR073297	Stem 1	24.734
	CRR073298	Stem 2	21.736
	CRR073299	Stem 3	23.012
	CRR073300	Leaf 1	35.611
	CRR073301	Leaf 2	30.835
	CRR073302	Leaf 3	26.771
	CRR073303	Juvenile bud 1	41.687
	CRR073304	Juvenile bud 2	24.320
	CRR073305	Juvenile bud 3	63.320
	CRR073306	Third green 1	11.765
	CRR073307	Third green 2	10.895
	CRR073308	Third green 3	12.838
	CRR073309	Second white 1	22.687
	CRR073310	Second white 2	14.701
	CRR073311	Second white 3	14.634
	CRR073312	Silver flowering 1	10.571
	CRR073313	Silver flowering 2	17.715
	CRR073314	Silver flowering 3	13.399
	CRR073315	Gold flowering 1	32.496
	CRR073316	Gold flowering 2	54.831
	CRR073317	Gold flowering 3	67.144
	CRR073318	Tawny withering 1	52.787
	CRR073319	Tawny withering 2	84.445
	CRR073320	Tawny withering 3	36.929