Gene detail

Detail information of GWHGAAZE002066

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_008244478.1	PREDICTED: ketol-acid reductoisomerase, chloroplastic [Prunus mume]
COG	YP_003690422.1	Ketol-acid reductoisomerase
Swissprot	tr\|Q05758\|ILV5_ARATH	Ketol-acid reductoisomerase, chloroplastic (Precursor)
trEMBL	tr\|A5AGN5\|A5AGN5_VITVI	Ketol-acid reductoisomerase {ECO:0000256\|PIRNR:PIRNR000118}
TAIR10	AT3G58610.3	ketol-acid reductoisomerase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	68522674	68528583	-
GWHAAZE00000001	mRNA	68522674	68528583	-
GWHAAZE00000001	exon	68522674	68523042	-
GWHAAZE00000001	exon	68523943	68524098	-
GWHAAZE00000001	exon	68524593	68524760	-
GWHAAZE00000001	exon	68525155	68525294	-
GWHAAZE00000001	exon	68525377	68525494	-
GWHAAZE00000001	exon	68525926	68526111	-
GWHAAZE00000001	exon	68526692	68526796	-
GWHAAZE00000001	exon	68526926	68526991	-
GWHAAZE00000001	exon	68528201	68528293	-
GWHAAZE00000001	exon	68528488	68528583	-
GWHAAZE00000001	CDS	68528488	68528583	-
GWHAAZE00000001	CDS	68528201	68528293	-
GWHAAZE00000001	CDS	68526926	68526991	-
GWHAAZE00000001	CDS	68526692	68526796	-
GWHAAZE00000001	CDS	68525926	68526111	-
GWHAAZE00000001	CDS	68525377	68525494	-
GWHAAZE00000001	CDS	68525155	68525294	-
GWHAAZE00000001	CDS	68524593	68524760	-
GWHAAZE00000001	CDS	68523943	68524098	-
GWHAAZE00000001	CDS	68522674	68523042	-

Transcript Sequence
>GWHTAAZE002070 ATGGTGTCTGTGCCTGCTATTAAGCCGCCTGCTTTGCTCGATTTTGATACCTCTGTGTTTAAGAAAGAGAAGATTACTCTCGCAGGTCACGATGAGTATATTGTGAGAGGAGGGAGGGATTTGTTCCATTTGCTGCCAGATGCATTCAAGGGTATTAAGCAGATTGGTGTTATTGGTTGGGGTTCTCAGGGCCCTGCGCAGGCTCAGAATTTAAGAGATTCTCTTGCTGAAGCAAAATCTGATATTGTGGTGAAGGCACGTGCTGCTGGTTTTACTGAAGAGAATGGTACCCTTGGAGATATATGGGAGACCATTTCTGGCAGTGATTTGGTCTTGCTTTTGATTTCTGATGCTGCCCAGGCTGATAATTACGAGGAAGTGCTTTCCCACATGAAGCCGAAGAGCATTCTTGGGCTTTCCCACGGGTTCCTTCTTGGTCACTTGCAGTCAATGTGCAAAGATTTTCCCAAAAACATCAGCGTGATAGCTGTTTGTCCTAAGGGGATGGGCCCTTCTATGAGGAGACTGTATGTGCAAGGCAAGGAGGATGTTGATGGCAGAGCTACAGATGTTGCTCTTGGGTGGTCAGTTGCTCTTGGTTCACCTTTTACATTTGCAACTACATTGGAGCAGGAGTACAAGAGTGACATACTTGGGGAGCGAGGCATTTTACTTGGTGCTGTGCACGGTATTGTGGAGTCCTTGTTTAGAAGGTACACAGAAAATGGGATGAGTGAAGATCTGGCTTACAAGAATACTGTAGAGTGTATTACAGGGACAATATCAAGAACCATTTCTTCTAAGGGAATGTTGGCAGTCTACAAGTCATTGTCAGAAGATGGCAAAAAGGAGTTTGAGGCTGCATATAGTGCTTCATATTATCCCTGCATGGATATCTTATACGAGTGCTATGAAGATGTAGCCAGTGGCAACGAGATAAGGAGTGTTGTTTTGGCAGGGCGTCGCTTCAATGAAAAGGAGGGATTACCAGCTTTCCCTATGGGTAAAATTGACAAGACAAGGATGTGGAAAGTAGGTGAGCGAGTTCGGAAGACGAGGCCAGTTGGGGATCTAGGCCCATTATATCCTTTCACTGCTGGTGTCTATGTAGCTCTAATGATGGCTCAGATTGAGATCCTGAGGAAGAAAGGGCACTCCTACTCTGAGATCATCAACGAAAGTTTGATCGAGTCAGTGGATTCTTTGAATCCCTTCATGCACGCCCGTGGCATTTCATTTATGGTTGATAATTGCTCAACAACTGCACGGCTAGGATCTAGGAAGTGGGCCCCACGATTCGATTACATTCTGACCCAGCAAGCCTTGGTGGCAGTGGACAACGGTGCACCCGTAAACCGAGATCTGATCAAGAACTTTATGTCTGATCCAGTGCATGGAGCCGTTGAAGTTTGTGCCCAATTGAGACCTTCTGTTGACATTTCGGTGCCTCAAGATGCTGATTTCGTTCGCCCAGAGCTGCGCCAGTCTAGCAACTAG

Network for GWHGAAZE002066

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07991.13	IlvN	53	200	1.40E-20
PF01450.20	IlvC	210	354	5.30E-34
PF01450.20	IlvC	367	435	4.90E-08
PF01596.18	Methyltransf_3	51	232	1.20E-62

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00053	ilvC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Valine, leucine and isoleucine biosynthesis	map00290
		Pantothenate and CoA biosynthesis	map00770

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0009082	biological_process	branched-chain amino acid biosynthetic process
GO:0004455	molecular_function	ketol-acid reductoisomerase activity
GO:0016491	molecular_function	oxidoreductase activity
GO:0008171	molecular_function	O-methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.277
	SRR3591706	second leaf	4.686
	SRR3591707	mature leaf	6.246
	SRR3591708	Shoot apex	10.404
	SRR3591709	Stem	13.982
	SRR3591710	White floral bud	9.248
	SRR3591711	White flower	9.879
	SRR3591712	Green floral bud	9.257
	SRR3591713	Yellow flower	8.454
SRP173429	SRR8316895	Juvenile bud stage	8.125
	SRR8316896	Juvenile bud stage	10.057
	SRR8316897	Juvenile bud stage	2.978
	SRR8316894	Third green stage	4.340
	SRR8316900	Third green stage	8.545
	SRR8316901	Third green stage	9.397
	SRR8316898	Complete white stage	2.832
	SRR8316899	Complete white stage	12.444
	SRR8316903	Complete white stage	7.038
	SRR8316902	Silver flowering stage	4.237
	SRR8316904	Silver flowering stage	3.806
	SRR8316905	Silver flowering stage	1.938
	SRR8316906	Gold flowering stage	7.227
	SRR8316907	Gold flowering stage	7.692
	SRR8316908	Gold flowering stage	11.799
SRP132670	SRR6706286	Control	7.873
	SRR6706287	Light intensity 50%	7.050
	SRR6706288	Light intensity 20%	8.474
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.166
	CNS0095593	Slightly white alabastrum(diploid) 2	8.295
	CNS0095594	Slightly white alabastrum(diploid) 3	7.241
	CNS0095595	Whole white alabastrum(diploid) 2	6.646
	CNS0095596	Whole white alabastrum(diploid) 3	7.973
	CNS0095597	Whole white alabastrum(diploid) 4	5.734
	CNS0095598	Silvery flower (diploied) 1	12.466
	CNS0095599	Silvery flower (diploied) 2	7.730
	CNS0095600	Silvery flower (diploied) 3	4.827
	CNS0095601	Golden flower (diploid) 1	6.082
	CNS0095602	Golden flower (diploid) 2	5.914
	CNS0095603	Golden flower (diploid) 3	6.456
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.843
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.855
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.747
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.577
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.212
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.265
	CNS0095610	Silvery flower (diploied) 1	12.878
	CNS0095611	Silvery flower (diploied) 2	13.208
	CNS0095612	Silvery flower (diploied) 3	7.206
	CNS0095613	Golden flower (tetraploid) 1	12.148
	CNS0095614	Golden flower (tetraploid) 2	11.064
	CNS0095615	Golden flower (tetraploid) 3	16.914
CRA001975	CRR073297	Stem 1	11.940
	CRR073298	Stem 2	14.267
	CRR073299	Stem 3	7.318
	CRR073300	Leaf 1	12.465
	CRR073301	Leaf 2	10.871
	CRR073302	Leaf 3	4.232
	CRR073303	Juvenile bud 1	7.366
	CRR073304	Juvenile bud 2	3.943
	CRR073305	Juvenile bud 3	7.470
	CRR073306	Third green 1	0.901
	CRR073307	Third green 2	0.830
	CRR073308	Third green 3	1.032
	CRR073309	Second white 1	2.324
	CRR073310	Second white 2	0.764
	CRR073311	Second white 3	0.755
	CRR073312	Silver flowering 1	1.320
	CRR073313	Silver flowering 2	1.674
	CRR073314	Silver flowering 3	1.156
	CRR073315	Gold flowering 1	2.788
	CRR073316	Gold flowering 2	6.246
	CRR073317	Gold flowering 3	4.764
	CRR073318	Tawny withering 1	5.482
	CRR073319	Tawny withering 2	4.498
	CRR073320	Tawny withering 3	4.201