Gene detail

Detail information of GWHGAAZE002115

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002275272.1	PREDICTED: uncharacterized protein LOC100250601 isoform X2 [Vitis vinifera]
trEMBL	tr\|A0A067JX12\|A0A067JX12_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP24079.1}
TAIR10	AT5G44180.1	Homeodomain-like transcriptional regulator

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	69742079	69759558	+
GWHAAZE00000001	mRNA	69742079	69759558	+
GWHAAZE00000001	exon	69742079	69742130	+
GWHAAZE00000001	exon	69742213	69742272	+
GWHAAZE00000001	exon	69742347	69742436	+
GWHAAZE00000001	exon	69745323	69745402	+
GWHAAZE00000001	exon	69747093	69747525	+
GWHAAZE00000001	exon	69748016	69748053	+
GWHAAZE00000001	exon	69749260	69749482	+
GWHAAZE00000001	exon	69750461	69750561	+
GWHAAZE00000001	exon	69751302	69751388	+
GWHAAZE00000001	exon	69751695	69751845	+
GWHAAZE00000001	exon	69752050	69752111	+
GWHAAZE00000001	exon	69752768	69752977	+
GWHAAZE00000001	exon	69753252	69753935	+
GWHAAZE00000001	exon	69754398	69754931	+
GWHAAZE00000001	exon	69756575	69757111	+
GWHAAZE00000001	exon	69757954	69758058	+
GWHAAZE00000001	exon	69758140	69758397	+
GWHAAZE00000001	exon	69758872	69758963	+
GWHAAZE00000001	exon	69759042	69759558	+
GWHAAZE00000001	CDS	69742079	69742130	+
GWHAAZE00000001	CDS	69742213	69742272	+
GWHAAZE00000001	CDS	69742347	69742436	+
GWHAAZE00000001	CDS	69745323	69745402	+
GWHAAZE00000001	CDS	69747093	69747525	+
GWHAAZE00000001	CDS	69748016	69748053	+
GWHAAZE00000001	CDS	69749260	69749482	+
GWHAAZE00000001	CDS	69750461	69750561	+
GWHAAZE00000001	CDS	69751302	69751388	+
GWHAAZE00000001	CDS	69751695	69751845	+
GWHAAZE00000001	CDS	69752050	69752111	+
GWHAAZE00000001	CDS	69752768	69752977	+
GWHAAZE00000001	CDS	69753252	69753935	+
GWHAAZE00000001	CDS	69754398	69754931	+
GWHAAZE00000001	CDS	69756575	69757111	+
GWHAAZE00000001	CDS	69757954	69758058	+
GWHAAZE00000001	CDS	69758140	69758397	+
GWHAAZE00000001	CDS	69758872	69758963	+
GWHAAZE00000001	CDS	69759042	69759558	+

Transcript Sequence
>GWHTAAZE002119 ATGTTTCACCGGCTGCAGTTATGGGATCCTCCTGGAGGGATTGGGGATGATGCGAGACTGGTTGTTCCTCGAAAGGGTGGCAGTGGCTCTGCTGCTGTTGCTAGGATTGGAGGCACAGCTAGGGAGCCATTGAGAGAAGATGGGCCTATTCTTGGAATGGAGTTCGATCCCTTGCCACCTGGTGCATTTGGGGCACCCATTGTGACAACAGGGCAGCAGAAATCAGCTGGAAGGCCTTATGAGGCCAAACTATATGAGAGGCCTGATTCCAAATTGACTAAGGGTGCATCGAGGGCTCTCCATGAATACCAGTTTCTTCCAGAGCAGCCATCTGTGAGAAACGATTCATATGAGCGAGCTGTTTCATCATCTCACTACTATGGTTCACCAACTGATGTTCCAAGTGCACGAACTCCATTATCTACGGGGAGGTCAGTAGCCCATGCCAATGAGCAAGTGCCATCTGGTTATGGTTTCCAAGGGCAGCAGTTGCCAAGTTTAAATCTTTTACCTCAGCAAGGAAGGCAAGGCCATGTATTGCCTTCGACTTCAGGAGACTATGACATGGTTCCTCGGAAAAATTCTTTTGCAAACACTGGTGTGGATGTGCAAGTTGGTGCTCACCCAATTGCTGGACTGGACAATCCGTTTATGCCACCTGATAGACAGCCCACCCATGATGAGGAAATTTTGCGGATGGAGAAGAAAGCGCAAGGAGTATTGACTCTTGTGGTAACTTTCCTCTTTGTATCGGCTGAGAAACTGAGACTAAAAGAAGAAATGCGCAAAGAAAAAGAGGCTGCTAGGCTTAAAGCAGCTAATGAAAGGGCTACTGCTCGAAGAATTGCTAAAGAAGCAACAGAACTTATTGACGATGAACGTGTGGAGCTCATGGATTTAGCAACAGCGAGGCTGGGGTTGCCCTCGTTGTTGTCTCTTGACAGTGAAACCTTGCAAAATCTCGAGTCATTCAGAGATATGCTCACTGAGTTCCCACCCAAGTCTGTTCGCTTGAAAATGCCATTTGCAGTTCAGCCCTGGATTTATTCCGAGGAGAATACAGGCAATCTTCTTATGGTTTGGAGATTTTTAATTACTTTTGCTGATGTTCTTGGGCTTTGGCCGTTTACTCTGGATGAATTTGTTCAAGCCCTTCACGATTATGATTCAAGGTTGTTGGGTGAGATACATGTAGCTCTTTTGAGATCCATTATTAAAGATATTGAAGATGTAGCAAGGGACGCCTCTACTGTGTTGGGGCAAATCAACATAGTGCTGCTAATCCTGGAGGAGGGCATCCACAGATTGTTGAAGGGGTTTGGGCCTAAATTGAAGAAAAGGAATGTTGAACAATCATATCTTCGTGATGAAAATGAGGGTACTGATGGTGAAGATGTCATCTCTAATCTACGTAATGGAGTTGCAGCTGAAAATGCTCTCGCCATTATGCAAGAAAGGGGTTTCTCTAATCCACGTCGATCGAGGCATCGCTTGACACCCGGCACTGTAAAATTTGCTGCATTTCATGTTCTTTCACTAGAGGGAAGCAAAGGTCTTACGATATTAGATGTTGCAGAAAGGATTCAGAAATCTGGTCTTCGAGACCTCACTACAAGCAAGACACCAGAAGCGTCTATTGCCGCTGCTTTATCGAGAGATACAAAGCTGTTTGAAAGAACAGCCCCTTCAACATATTGTGTGCGGGCCCCTTATAGGAAGGATCCTGCTGATGCTGAGGCTATACTTTCTGAAGCCAGGGAAAAAATTCAGGTGTTTAAAAACGGATATTTTGAGGGAGATGATGTTGAAAGAGAGGATGTTGAAAGAGATGAAGATTCTGAAAGTGATGTTGCTGAGGATTTGGAGGTTGATGATTTGGGTACCGAATTGAAACCGGACAAAGAAGCCCTTTCTTGTGAAGGGAATACATTTCAAGGAAAAATAGGCTTGGGAAATGGAAAGGAAACATTACAAGATGGGATTGATAATATGAGTAGTGGTTTAACTTCTATGGATTCTGAAGGCTTGAAAGAGGTCAAAGTTACTGGTGCTAGTGGCGGTAGATCGATCGATTTTGTTGGGGTTCACAATGAGGTGACTAACGCTGATCAAGAAAGTAGTGTGATCGATGAAAGCAACTGTGGCGACCCGTGGGTTCATGCGCTTACGGAAGGGGAATACTCTGACCTGAGTGTTGAAGAGCGCCTTAGTGCCCTTGTTGCATTAATTGGTGTTGCAAATGAAGGAAACTCTATCCGCGTTGTTCTTGAGGAACGCTTGGAAGCAGCGAATGCTTTGAAGAAGCAGATATGGGCAGAGGCACAAGTGGATAAACGTCGTATGAAAGAGGAGTATGTTATGAAGATGCAATATTCTTCATCTTTTGTGAAGCCAGAACATAATCTTTCTATTTCTGCTGTAGAGGGCAGAAAAAGTCCTTTTGCTGGTGATGACAAAAATGATTTACCCTTTGGCGATCCACAGAATGATATTATAAATAATCCTAATTATATGTCCATCGAAAGGAATCTGCCAATGCAAGATATTTCTGTGGCCCCAGATAATAATCTTTCACTTCAGCAAGCTGGATGTGCTGCTGCAGAGAAGTCAAGGTCTCAGTTAAAAGCTTTCATTGGTCACAAAGCAGAGGAGATGTATGTATATAGGTCTTTGCCTCTCGGACAAGACCGCAGGCGGAATCGCTACTGGCAGTTTATTACATCTTCTTCCCGAAATGACCCTGGCTCTGGCAGGATCTTTGTTGAGCTACGTGATGGTCATTGGCGGCTTATTGATTCTGAAGAGAGTTTCGATGCTATGTTGGCGTCATTGGATGTAAGAGGGGTTAGGGAGTCTAATCTGCTTTCGATGTTGCAAAGGATTGAAGTGTCTTTCAAGGAAACCGTGAGGAAGAACCGTACTGTGAAAACAGAAATTTCAGAAATGGCTCCTCCTAATTCTAATTGCAGTGCCACCAGCATAATAGATAGCCCTAACAGCACTGTTTGTGATATGACAGAATCCTCATCATCTTTTGCAATTGGGTTGGGGAGGAATGAAAAAGAGAAAAATGAGGCGTCAAAGAGATATCAAGAATTTGAAAAGTGGATATGGGACGAATGTTTTAATGCTTCGATATTATGTGCCTTGAAATATGGGAAGACAAGATGTAAACAATTATTGGGTGTTTGTGACTTTTGCCATGATTTGTACTTTAATTTTGATGAACATGCAGCTGAATGCAAAGAGAAAAATGGGGAGGCTGACTGGACTTCTCACAATGTTGGGTCATCCCTTCCCCCGAGGATCAGATTGCTCAAAGCGCAATTAGCAATGATAGAGGTCTCTGTTTTAGTGGGGGCTCTTCAACCTGCTTGGTCAGATGACTTCCGAGAAACTTGGGCTGTGAAGCTGCATAATGCGTCGTCAGCTGAAGACCTTCTCCAGATTCTGACAATGTTGGAGAGTGCCGTAAAGAGGGACTTTTTGTCCTTGAATTTTGAGACAACCACTGAATTGTTGGGTTCCAGTAACCCTAAGATCGTTAATAGATCCTCCATTGCTGAAACGGTTTCCGTACTTCCTTGGTTACCTCAAACAACATCTTCTGTGGCACTAAGGCTCATGGAACTTGATTCCTCTATTTTTTACACGCTTGAGCTGAAAGAGGAATCTCAAAAGGACAAAGGAGGCTTGGATTTAATGGCAATTCCAACAAAACACACCGTTGTGAAGAATGTCCCTGACTATCAACTAGCTGAAGCCCCACACGAACCTGGATATCAGCATCAAGATCCAGGTGGAAGACCTCAAAAACAGGTCATCGGATCCAGATCCGAATCAGGCCCACGAAGTACCACAACAAACAACGAGAGGCTCGGGCAATTAGTGGGGTGGAAAGGGCGGGCCCGTGGGCGGGGTGGACGTAAGAGGGGCCGCCGCACCACTAGAAGCAGGCAAAAGCCTGTCAAAAGAGTGACGGATATCACCGGTGAGAGAGAGAATGCTAGAGTCACCACCGCCTTTGACACAAGTTCAGTGCAGCCAGACTGGAACATGGAAGAAACTACTACGCCGGTACGAGCTGAGAGCGCTGAGAATGTTAGCAGTTCTGATAGATCAGAATACGATGATGATGATACCATTGGCCCGCCAATCGGTGACGAGTACGATGATCTAATGGCGGCAGGCGGCAGCTACTCTGGTGTATTCAGCAGCAACAAGCCTGAGTACCTAATGGAGGGTGGTGTTGACTATGGTGATGAGGATGATGATTATGTCAATGATGACGAGGAGGATGATGTTGAGGGCTAA

Network for GWHGAAZE002115

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02791.18	DDT	353	407	9.70E-18
PF05066.14	HARE-HTH	501	569	9.90E-17
PF15612.7	WHIM1	718	757	1.70E-07
PF15613.7	WSD	888	961	1.20E-13
PF00069.26	Pkinase	37	216	2.10E-37

Protein Sequence

>GWHPAAZE002117
MFHRLQLWDPPGGIGDDARLVVPRKGGSGSAAVARIGGTAREPLREDGPILGMEFDPLPPGAFGAPIVTTGQQKSAGRPYEAKLYERPDSKLTKGASRALHEYQFLPEQPSVRNDSYERAVSSSHYYGSPTDVPSARTPLSTGRSVAHANEQVPSGYGFQGQQLPSLNLLPQQGRQGHVLPSTSGDYDMVPRKNSFANTGVDVQVGAHPIAGLDNPFMPPDRQPTHDEEILRMEKKAQGVLTLVVTFLFVSAEKLRLKEEMRKEKEAARLKAANERATARRIAKEATELIDDERVELMDLATARLGLPSLLSLDSETLQNLESFRDMLTEFPPKSVRLKMPFAVQPWIYSEENTGNLLMVWRFLITFADVLGLWPFTLDEFVQALHDYDSRLLGEIHVALLRSIIKDIEDVARDASTVLGQINIVLLILEEGIHRLLKGFGPKLKKRNVEQSYLRDENEGTDGEDVISNLRNGVAAENALAIMQERGFSNPRRSRHRLTPGTVKFAAFHVLSLEGSKGLTILDVAERIQKSGLRDLTTSKTPEASIAAALSRDTKLFERTAPSTYCVRAPYRKDPADAEAILSEAREKIQVFKNGYFEGDDVEREDVERDEDSESDVAEDLEVDDLGTELKPDKEALSCEGNTFQGKIGLGNGKETLQDGIDNMSSGLTSMDSEGLKEVKVTGASGGRSIDFVGVHNEVTNADQESSVIDESNCGDPWVHALTEGEYSDLSVEERLSALVALIGVANEGNSIRVVLEERLEAANALKKQIWAEAQVDKRRMKEEYVMKMQYSSSFVKPEHNLSISAVEGRKSPFAGDDKNDLPFGDPQNDIINNPNYMSIERNLPMQDISVAPDNNLSLQQAGCAAAEKSRSQLKAFIGHKAEEMYVYRSLPLGQDRRRNRYWQFITSSSRNDPGSGRIFVELRDGHWRLIDSEESFDAMLASLDVRGVRESNLLSMLQRIEVSFKETVRKNRTVKTEISEMAPPNSNCSATSIIDSPNSTVCDMTESSSSFAIGLGRNEKEKNEASKRYQEFEKWIWDECFNASILCALKYGKTRCKQLLGVCDFCHDLYFNFDEHAAECKEKNGEADWTSHNVGSSLPPRIRLLKAQLAMIEVSVLVGALQPAWSDDFRETWAVKLHNASSAEDLLQILTMLESAVKRDFLSLNFETTTELLGSSNPKIVNRSSIAETVSVLPWLPQTTSSVALRLMELDSSIFYTLELKEESQKDKGGLDLMAIPTKHTVVKNVPDYQLAEAPHEPGYQHQDPGGRPQKQVIGSRSESGPRSTTTNNERLGQLVGWKGRARGRGGRKRGRRTTRSRQKPVKRVTDITGERENARVTTAFDTSSVQPDWNMEETTTPVRAESAENVSSSDRSEYDDDDTIGPPIGDEYDDLMAAGGSYSGVFSSNKPEYLMEGGVDYGDEDDDYVNDDEEDDVEG

Gene family

Gene family	subfamily
Transcription Factors Family	DDT
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006351	biological_process	transcription, DNA-templated
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.054
	SRR3591706	second leaf	8.123
	SRR3591707	mature leaf	14.475
	SRR3591708	Shoot apex	7.774
	SRR3591709	Stem	16.885
	SRR3591710	White floral bud	22.570
	SRR3591711	White flower	23.817
	SRR3591712	Green floral bud	18.857
	SRR3591713	Yellow flower	16.123
SRP173429	SRR8316895	Juvenile bud stage	8.046
	SRR8316896	Juvenile bud stage	12.041
	SRR8316897	Juvenile bud stage	9.183
	SRR8316894	Third green stage	6.180
	SRR8316900	Third green stage	12.783
	SRR8316901	Third green stage	12.949
	SRR8316898	Complete white stage	3.066
	SRR8316899	Complete white stage	13.524
	SRR8316903	Complete white stage	10.928
	SRR8316902	Silver flowering stage	5.611
	SRR8316904	Silver flowering stage	10.009
	SRR8316905	Silver flowering stage	4.986
	SRR8316906	Gold flowering stage	14.547
	SRR8316907	Gold flowering stage	13.364
	SRR8316908	Gold flowering stage	19.557
SRP132670	SRR6706286	Control	18.558
	SRR6706287	Light intensity 50%	19.639
	SRR6706288	Light intensity 20%	19.873
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.690
	CNS0095593	Slightly white alabastrum(diploid) 2	7.564
	CNS0095594	Slightly white alabastrum(diploid) 3	7.116
	CNS0095595	Whole white alabastrum(diploid) 2	7.475
	CNS0095596	Whole white alabastrum(diploid) 3	4.656
	CNS0095597	Whole white alabastrum(diploid) 4	6.439
	CNS0095598	Silvery flower (diploied) 1	13.272
	CNS0095599	Silvery flower (diploied) 2	10.648
	CNS0095600	Silvery flower (diploied) 3	17.933
	CNS0095601	Golden flower (diploid) 1	12.841
	CNS0095602	Golden flower (diploid) 2	21.325
	CNS0095603	Golden flower (diploid) 3	20.554
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.322
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.639
	CNS0095606	Slightly white alabastrum(tetraploid) 3	38.209
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.829
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.715
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.393
	CNS0095610	Silvery flower (diploied) 1	36.056
	CNS0095611	Silvery flower (diploied) 2	32.497
	CNS0095612	Silvery flower (diploied) 3	29.104
	CNS0095613	Golden flower (tetraploid) 1	17.523
	CNS0095614	Golden flower (tetraploid) 2	28.991
	CNS0095615	Golden flower (tetraploid) 3	33.126
CRA001975	CRR073297	Stem 1	18.039
	CRR073298	Stem 2	14.456
	CRR073299	Stem 3	9.220
	CRR073300	Leaf 1	17.763
	CRR073301	Leaf 2	13.885
	CRR073302	Leaf 3	10.298
	CRR073303	Juvenile bud 1	12.481
	CRR073304	Juvenile bud 2	6.026
	CRR073305	Juvenile bud 3	17.318
	CRR073306	Third green 1	7.366
	CRR073307	Third green 2	3.425
	CRR073308	Third green 3	6.718
	CRR073309	Second white 1	2.869
	CRR073310	Second white 2	5.732
	CRR073311	Second white 3	6.499
	CRR073312	Silver flowering 1	4.420
	CRR073313	Silver flowering 2	4.904
	CRR073314	Silver flowering 3	4.434
	CRR073315	Gold flowering 1	4.964
	CRR073316	Gold flowering 2	11.817
	CRR073317	Gold flowering 3	4.149
	CRR073318	Tawny withering 1	12.729
	CRR073319	Tawny withering 2	11.200
	CRR073320	Tawny withering 3	11.025