Gene detail

Detail information of GWHGAAZE002137

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007043706.1	0	C2H2 and C2HC zinc fingers superfamily protein [Theobroma cacao]
Swissprot	tr\|Q9FFH3\|IDD8_ARATH	2E-145	Zinc finger protein NUTCRACKER
trEMBL	tr\|A0A061E4I0\|A0A061E4I0_THECC	0	C2H2 and C2HC zinc fingers superfamily protein {ECO:0000313\|EMBL:EOX99537.1}
TAIR10	AT1G03840.1	4E-115	C2H2 and C2HC zinc fingers superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	70874119	70876383	+
GWHAAZE00000001	mRNA	70874119	70876383	+
GWHAAZE00000001	exon	70874119	70874218	+
GWHAAZE00000001	exon	70874517	70874913	+
GWHAAZE00000001	exon	70875624	70876383	+
GWHAAZE00000001	CDS	70874119	70874218	+
GWHAAZE00000001	CDS	70874517	70874913	+
GWHAAZE00000001	CDS	70875624	70876383	+

Transcript Sequence
>GWHTAAZE002141 ATGGTCGATGGAGCAATTTCAAATGGTTTTGCGCAAAACCAAGTTGCAGGATCCGTTCCTCCCACCATCAAGAAGAAGAGAAATCTACCAGGAACCCCGGATCCTGAAGCTGAAGTGATCGCGTTATCGCCCAAGACCCTAATGGCCACAAACAGATTCTTGTGTGAGATATGTGGGAAGGGTTTTCAGAGAGATCAAAACCTGCAACTTCACCGCCGAGGGCATAATCTACCATGGAAGCTGAAGCAAAGGACTAGCAAGGAAGTGAGGAAGCGCGTGTACGTTTGCCCTGAAAAGAGCTGTGTCCACAACCACCCTTCTAGGGCTCTCGGGGACCTGACGGGGATAAAGAAGCACTTCTGCCGAAAACACGGTGAGAAGAAGTGGAAGTGTGAAAAGTGCCAGAAGCGATACGCGGTGCAGTCAGACTGGAAAGCCCACTCGAAAACTTGTGGTACCAGAGAGTACAAATGCGACTGCGGTACTATATTTTCAAGGAGAGATAGTTTCATCACGCATAGAGCTTTCTGTGACGCATTAGCTGAAGAAACCGCTAGAGTGACAGCGGCATCGAACATCAACAATAACATACCAACAACAACAGCAGCACCAACTAATTTCAACTATCATTTTACGGGGAGTTCCTCAATGATCAGCCCGTCAATGGCCCAACATTTTTCGTCGATCTTTAAGCCAATCTCAACAACCCATGAGCTAATCGATCCAACAACGCAGGGTCTTTCACTCTGGATGGGCCAGACAAACAATAATCAAGAAATGCCCCAATCGCTATTCAATGAAATTCCATCACTTAGTGTTTCCATCTCGAATCCTCCACCGTCCGATTATCACTTCAATTGGGGACTTGGAAATAAGCATCAATCTTGTGATGCTGATGAGCAGCTCACTAGCACTTCTTCAATACTCCCTTCAGCGAATATGTCGGCCACAGCTCTGCTGCAAAAGGCTGCCCAAATGGGGGCTACTACTAGTAACATTCGGGTTTTGGATGACAGTAAGTACTGTGGGTTATACGGTACAAGCTCAGCATGCACCGGGTTGGGGAGTACAACTGATGTGGAGAGTTCTTCTGTGAGTGATCAGCTCTGTAGTTTGAATCAGTTTCAGATGTATCCTGCAAAGCGCAGGCACATACAGAGTGATCAAGAGGGTGGTGGTGGAGGGCAAACTAGGGATTTCTTGGGTGTCGGGGTACAACCCGTTTGTCATCCACCTTCAATTAATGGATGGATTTGA

Network for GWHGAAZE002137

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00096.27	zf-C2H2	54	75	0.014
PF01975.18	SurE	62	254	1.20E-48

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
K03787	surE	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Purine metabolism	map00230
		Pyrimidine metabolism	map00240
		Nicotinate and nicotinamide metabolism	map00760

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0016787	molecular_function	hydrolase activity
GO:0008252	molecular_function	nucleotidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.594
	SRR3591706	second leaf	8.100
	SRR3591707	mature leaf	4.620
	SRR3591708	Shoot apex	6.568
	SRR3591709	Stem	7.829
	SRR3591710	White floral bud	13.410
	SRR3591711	White flower	14.675
	SRR3591712	Green floral bud	8.079
	SRR3591713	Yellow flower	11.400
SRP173429	SRR8316895	Juvenile bud stage	2.129
	SRR8316896	Juvenile bud stage	2.617
	SRR8316897	Juvenile bud stage	1.240
	SRR8316894	Third green stage	2.938
	SRR8316900	Third green stage	9.475
	SRR8316901	Third green stage	7.287
	SRR8316898	Complete white stage	6.496
	SRR8316899	Complete white stage	15.137
	SRR8316903	Complete white stage	11.497
	SRR8316902	Silver flowering stage	7.677
	SRR8316904	Silver flowering stage	11.491
	SRR8316905	Silver flowering stage	4.589
	SRR8316906	Gold flowering stage	15.767
	SRR8316907	Gold flowering stage	8.860
	SRR8316908	Gold flowering stage	17.590
SRP132670	SRR6706286	Control	13.621
	SRR6706287	Light intensity 50%	13.022
	SRR6706288	Light intensity 20%	11.820
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.244
	CNS0095593	Slightly white alabastrum(diploid) 2	3.085
	CNS0095594	Slightly white alabastrum(diploid) 3	5.411
	CNS0095595	Whole white alabastrum(diploid) 2	3.584
	CNS0095596	Whole white alabastrum(diploid) 3	3.743
	CNS0095597	Whole white alabastrum(diploid) 4	2.888
	CNS0095598	Silvery flower (diploied) 1	3.041
	CNS0095599	Silvery flower (diploied) 2	4.054
	CNS0095600	Silvery flower (diploied) 3	17.287
	CNS0095601	Golden flower (diploid) 1	3.821
	CNS0095602	Golden flower (diploid) 2	17.415
	CNS0095603	Golden flower (diploid) 3	14.050
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.026
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.062
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.402
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.594
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.311
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.519
	CNS0095610	Silvery flower (diploied) 1	11.229
	CNS0095611	Silvery flower (diploied) 2	13.842
	CNS0095612	Silvery flower (diploied) 3	11.986
	CNS0095613	Golden flower (tetraploid) 1	5.981
	CNS0095614	Golden flower (tetraploid) 2	7.754
	CNS0095615	Golden flower (tetraploid) 3	17.138
CRA001975	CRR073297	Stem 1	9.569
	CRR073298	Stem 2	8.991
	CRR073299	Stem 3	9.491
	CRR073300	Leaf 1	14.923
	CRR073301	Leaf 2	12.351
	CRR073302	Leaf 3	11.942
	CRR073303	Juvenile bud 1	12.671
	CRR073304	Juvenile bud 2	9.889
	CRR073305	Juvenile bud 3	22.662
	CRR073306	Third green 1	21.291
	CRR073307	Third green 2	13.261
	CRR073308	Third green 3	19.760
	CRR073309	Second white 1	11.273
	CRR073310	Second white 2	16.230
	CRR073311	Second white 3	12.122
	CRR073312	Silver flowering 1	11.128
	CRR073313	Silver flowering 2	8.128
	CRR073314	Silver flowering 3	15.969
	CRR073315	Gold flowering 1	3.411
	CRR073316	Gold flowering 2	8.098
	CRR073317	Gold flowering 3	5.235
	CRR073318	Tawny withering 1	7.866
	CRR073319	Tawny withering 2	0.480
	CRR073320	Tawny withering 3	6.900