Gene detail

Detail information of GWHGAAZE002198

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010242951.1	9.5248E-149	PREDICTED: expansin-B3-like [Nelumbo nucifera]
COG	YP_004403815.1	0.000000004	rare lipoprotein a
Swissprot	tr\|Q9M0I2\|EXPB3_ARATH	5E-132	Expansin-B3 (Precursor)
trEMBL	tr\|D7TE44\|D7TE44_VITVI	6E-148	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI28767.3}
TAIR10	AT4G28250.1	1E-93	expansin B3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	72653330	72658167	+
GWHAAZE00000001	mRNA	72653330	72658167	+
GWHAAZE00000001	exon	72653330	72653607	+
GWHAAZE00000001	exon	72654804	72655110	+
GWHAAZE00000001	exon	72656199	72656328	+
GWHAAZE00000001	exon	72657835	72658167	+
GWHAAZE00000001	five_prime_UTR	72653330	72653444	+
GWHAAZE00000001	CDS	72653445	72653607	+
GWHAAZE00000001	CDS	72654804	72655110	+
GWHAAZE00000001	CDS	72656199	72656328	+
GWHAAZE00000001	CDS	72657835	72658035	+
GWHAAZE00000001	three_prime_UTR	72658036	72658167	+

Transcript Sequence
>GWHTAAZE002202 CTGTCGGCAGAGTAGTAGCTCTCTCTTTTTTCTCGGTTTCTCAGCAGTGCCGGCAAATTTGACGGCGGTGAGGTGGTGCTGCTGACCCACATTTTGACTATACCCAAGATATATAATGGAGGGTTTTTGCCGCTTTCCCAAACTTGGGTTTTCTCTGTTTTTTTGCTTGGTGGTAGTTCTGGGTGTCTCCGGCGCCCCTCTGCACCGCGTGCCTGTCTCACATTGGAGTCCCGCCACCGCCACGTGGTACGGAAGCGCTGAAGGCGACGGCAGTGATGGTGGTGCATGTGGGTACGGATCACTGGTGGATGTGAAGCCACTAAGGGCAAGAGTTGGGGCAGTGAGTCCAATTCTGTTCAAGGGAGGTGAAGGCTGTGGGGCCTGTTACAAGGTTAAGTGTTTGGACAAGTCCATTTGCTCTAGGAGGGCTGTTACCGTTATTATCACTGATGAGTGTCCCGGCGGCTATTGCTCCGGTGGCCGGACCCACTTCGACCTCAGCGGTGCTGCCTTTGGCCGCATGGCAATTTCCGGTGACAACAACCAGCTCCGCAACCGTGGCGTGATCTCCGTCATCTATCGCCGGACACCATGTAAATATCCGGGAAAAAACATAGCTTTCCTCGTAAAAGAAGGATCAACAAATTACTGGCTGTCTCTCTTAATAGAGTTTGAAGATGGAGATGGTGATGTAGGAGCTATGCATATAAGACAGGCAAATTCAGCTGAGTGGCTAGAGATGAGCCATGTATTTGGTGCAAGTTGGTGCATCAATGGGGCAGGAGCCTTGAATGGACCATTTTCAGTAAAGTTAACTACACTCTCAACAGGACGAACTCTCTCCGCAAGGGATGTTATTCCTCGAAACTGGTCTCCCAAAGCCACTTATACCTCTCGCCTTAATTTCTTCTCCTAATCAGCACCCCTTCTAGTGGTGGGTTCCATTTTAATTATAGAAGAATATATATCTAACACAGAAAAGTTGACACAAGATGTGATGATTATGTATGATTAAAATATAAGTTTGGATGGAAGCCAATTTCTATCT

Network for GWHGAAZE002198

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0252	GO:0004190 aspartic-type endopeptidase activity GOslim:molecular_function GO:0006508 proteolysis GOslim:biological_process GO:0019953 sexual reproduction GOslim:biological_process GO:0009072 aromatic amino acid family metabolic process GOslim:biological_process map00643 Styrene degradation GO:0005576 extracellular region GOslim:cellular_component GO:0005737 cytoplasm GOslim:cellular_component map00350 Tyrosine metabolism

Module ID

Function Annotation

CFinderModule0252

GO:0004190 aspartic-type endopeptidase activity GOslim:molecular_function
GO:0006508 proteolysis GOslim:biological_process
GO:0019953 sexual reproduction GOslim:biological_process
GO:0009072 aromatic amino acid family metabolic process GOslim:biological_process
map00643 Styrene degradation
GO:0005576 extracellular region GOslim:cellular_component
GO:0005737 cytoplasm GOslim:cellular_component
map00350 Tyrosine metabolism

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03330.19	DPBB_1	75	154	2.10E-17
PF01357.22	Expansin_C	167	249	1.20E-22
PF13417.7	GST_N_3	16	92	1.30E-19
PF14497.7	GST_C_3	136	210	9.10E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01800	maiA, GSTZ1	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Tyrosine metabolism	map00350
		Styrene degradation	map00643

Gene Ontology

GO term	Ontology	Name
GO:0009072	biological_process	aromatic amino acid family metabolic process
GO:0019953	biological_process	sexual reproduction
GO:0005737	cellular_component	cytoplasm
GO:0005576	cellular_component	extracellular region
GO:0005515	molecular_function	protein binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	45.318
	SRR3591706	second leaf	357.037
	SRR3591707	mature leaf	69.492
	SRR3591708	Shoot apex	163.701
	SRR3591709	Stem	24.537
	SRR3591710	White floral bud	13.531
	SRR3591711	White flower	2.271
	SRR3591712	Green floral bud	101.609
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	12.978
	SRR8316896	Juvenile bud stage	16.024
	SRR8316897	Juvenile bud stage	2.959
	SRR8316894	Third green stage	20.047
	SRR8316900	Third green stage	82.862
	SRR8316901	Third green stage	70.089
	SRR8316898	Complete white stage	0.455
	SRR8316899	Complete white stage	60.635
	SRR8316903	Complete white stage	0.857
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.090
	SRR8316907	Gold flowering stage	0.238
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	42.677
	SRR6706287	Light intensity 50%	43.916
	SRR6706288	Light intensity 20%	52.879
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.961
	CNS0095593	Slightly white alabastrum(diploid) 2	16.126
	CNS0095594	Slightly white alabastrum(diploid) 3	9.734
	CNS0095595	Whole white alabastrum(diploid) 2	16.920
	CNS0095596	Whole white alabastrum(diploid) 3	17.373
	CNS0095597	Whole white alabastrum(diploid) 4	14.044
	CNS0095598	Silvery flower (diploied) 1	5.798
	CNS0095599	Silvery flower (diploied) 2	2.329
	CNS0095600	Silvery flower (diploied) 3	0.363
	CNS0095601	Golden flower (diploid) 1	4.455
	CNS0095602	Golden flower (diploid) 2	1.547
	CNS0095603	Golden flower (diploid) 3	1.441
	CNS0095604	Slightly white alabastrum(tetraploid) 1	44.365
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.172
	CNS0095606	Slightly white alabastrum(tetraploid) 3	135.961
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.495
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.085
	CNS0095609	Whole white alabastrum(tetraploid) 3	64.847
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	1.868
	CNS0095612	Silvery flower (diploied) 3	1.324
	CNS0095613	Golden flower (tetraploid) 1	0.064
	CNS0095614	Golden flower (tetraploid) 2	0.081
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	118.650
	CRR073298	Stem 2	137.140
	CRR073299	Stem 3	120.201
	CRR073300	Leaf 1	166.332
	CRR073301	Leaf 2	138.264
	CRR073302	Leaf 3	137.871
	CRR073303	Juvenile bud 1	73.970
	CRR073304	Juvenile bud 2	11.274
	CRR073305	Juvenile bud 3	85.295
	CRR073306	Third green 1	0.368
	CRR073307	Third green 2	0.143
	CRR073308	Third green 3	0.258
	CRR073309	Second white 1	0.111
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.018
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.199
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.061
	CRR073316	Gold flowering 2	1.258
	CRR073317	Gold flowering 3	2.693
	CRR073318	Tawny withering 1	12.752
	CRR073319	Tawny withering 2	6.890
	CRR073320	Tawny withering 3	21.645