Gene detail

Detail information of GWHGAAZE002206

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007043551.1	3.68947E-94	AP2/ERF domain-containing transcription factor, putative [Theobroma cacao]
Swissprot	tr\|Q9M0J3\|ERF54_ARATH	1E-59	Ethylene-responsive transcription factor ERF054
trEMBL	tr\|A0A061E417\|A0A061E417_THECC	1E-94	AP2/ERF domain-containing transcription factor, putative {ECO:0000313\|EMBL:EOX99382.1}
TAIR10	AT2G20880.1	4E-46	Integrase-type DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	72753347	72754429	-
GWHAAZE00000001	mRNA	72753347	72754429	-
GWHAAZE00000001	exon	72754190	72754429	-
GWHAAZE00000001	exon	72754014	72754117	-
GWHAAZE00000001	exon	72753347	72753983	-
GWHAAZE00000001	CDS	72754190	72754429	-
GWHAAZE00000001	CDS	72754014	72754117	-
GWHAAZE00000001	CDS	72753347	72753983	-

Transcript Sequence
>GWHTAAZE002210 ATGGATTGGGAGACCCTTTTTCATGAAGCTTCCGTTTCCGATAACAGACCTCTCAAGAAAATCAAAAGCCCCGAACGCAAAGAAAACTCATATCAATCCTCCTCTGTTTCTTCATTCTCTCAACAAACACACTCTCTTTCTCTCTCCTCCTCTGTTCCAAACAGCCCCACTTTTCCTTCTCCAAGGCTATTTCCTTTTGCTTTCGATGGGTCACAGCCATCCATCGAAAGCCTACGCCAGATGATTTCTTTTGATCCTCTCCACAACCAGCAACAACAAACTTTGCAGTATTGGAGTGATGCATTGAATTTGAGCCCGAGAGGGAGAATGATGATGATCAACCGGCCACCCTTACAACCTTTTACTCCCACAAAGCTCTATAGAGGAGTGAGGCAGAGGCATTGGGGCAAATGGGTAGCCGAAATTCGCCTCCCTCGCAACCGGACCCGCCTTTGGCTCGGCACGTTTGACACTGCCGAAGATGCCGCCATGGCCTACGACCGCGAGGCCTTCAAATTGAGAGGCGAAAACGCAAAGCTGAATTTCCCTGAACGCTTTGTGGGCAAAGAAATGATCGCTTCCACAGCGCCTAGTTCTTCAACTTTTTCGCTTCCTAATGAAAGGAATCAAGAAGGGGTTAATGTGCAGGGTCCTAATATAGAGTTGGAAGCACCAACTGTACAAATTGAAGGGGGGAAAGTCGAACAAAGTGTGGGAAGTGGGTCTAATTCAGCAGAGTTAGTTTGGGGAGAAATGGGAGAGAATTGGTTCAATTCAATTCCGGGACCTGGTAGTCCTGTTTGGGACGATTTAGATACTACCAATAATCTTGTTTTGCCTTCTAATCTTTCTTTTGGGAATATTGTTAATCAGCAAGAACTTCAAGATTTTGACCCTAAAAATCAAGAAAATTTGGGTTCTTCTTCAGAAGCTACTCCTTCCAACCCCATCAAGCCCTTCCTTTGGAAGGATCAACACTAA

Network for GWHGAAZE002206

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	127	176	1.90E-13
PF00319.19	SRF-TF	17	64	1.60E-21

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF
Transcription Factors Family	TF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding
GO:0046983	molecular_function	protein dimerization activity
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.230
	SRR3591706	second leaf	0.102
	SRR3591707	mature leaf	2.567
	SRR3591708	Shoot apex	0.340
	SRR3591709	Stem	5.614
	SRR3591710	White floral bud	1.917
	SRR3591711	White flower	5.840
	SRR3591712	Green floral bud	0.643
	SRR3591713	Yellow flower	17.477
SRP173429	SRR8316895	Juvenile bud stage	0.457
	SRR8316896	Juvenile bud stage	0.209
	SRR8316897	Juvenile bud stage	0.348
	SRR8316894	Third green stage	0.137
	SRR8316900	Third green stage	0.430
	SRR8316901	Third green stage	0.979
	SRR8316898	Complete white stage	0.608
	SRR8316899	Complete white stage	2.011
	SRR8316903	Complete white stage	0.535
	SRR8316902	Silver flowering stage	2.149
	SRR8316904	Silver flowering stage	1.210
	SRR8316905	Silver flowering stage	0.893
	SRR8316906	Gold flowering stage	7.335
	SRR8316907	Gold flowering stage	6.983
	SRR8316908	Gold flowering stage	14.273
SRP132670	SRR6706286	Control	0.310
	SRR6706287	Light intensity 50%	0.378
	SRR6706288	Light intensity 20%	0.513
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.783
	CNS0095593	Slightly white alabastrum(diploid) 2	1.208
	CNS0095594	Slightly white alabastrum(diploid) 3	1.183
	CNS0095595	Whole white alabastrum(diploid) 2	1.072
	CNS0095596	Whole white alabastrum(diploid) 3	0.477
	CNS0095597	Whole white alabastrum(diploid) 4	0.647
	CNS0095598	Silvery flower (diploied) 1	2.210
	CNS0095599	Silvery flower (diploied) 2	2.296
	CNS0095600	Silvery flower (diploied) 3	3.210
	CNS0095601	Golden flower (diploid) 1	0.916
	CNS0095602	Golden flower (diploid) 2	2.793
	CNS0095603	Golden flower (diploid) 3	2.453
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.592
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.039
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.463
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.335
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.499
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.355
	CNS0095610	Silvery flower (diploied) 1	1.989
	CNS0095611	Silvery flower (diploied) 2	0.791
	CNS0095612	Silvery flower (diploied) 3	2.579
	CNS0095613	Golden flower (tetraploid) 1	4.973
	CNS0095614	Golden flower (tetraploid) 2	2.841
	CNS0095615	Golden flower (tetraploid) 3	2.295
CRA001975	CRR073297	Stem 1	0.688
	CRR073298	Stem 2	0.950
	CRR073299	Stem 3	0.184
	CRR073300	Leaf 1	1.445
	CRR073301	Leaf 2	1.654
	CRR073302	Leaf 3	0.405
	CRR073303	Juvenile bud 1	1.336
	CRR073304	Juvenile bud 2	1.123
	CRR073305	Juvenile bud 3	1.732
	CRR073306	Third green 1	1.738
	CRR073307	Third green 2	2.243
	CRR073308	Third green 3	1.964
	CRR073309	Second white 1	1.721
	CRR073310	Second white 2	2.355
	CRR073311	Second white 3	2.286
	CRR073312	Silver flowering 1	13.956
	CRR073313	Silver flowering 2	18.048
	CRR073314	Silver flowering 3	22.188
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.282
	CRR073317	Gold flowering 3	0.019
	CRR073318	Tawny withering 1	3.419
	CRR073319	Tawny withering 2	6.464
	CRR073320	Tawny withering 3	1.945