Detail information of GWHGAAZE002257


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009760717.10PREDICTED: aromatic-L-amino-acid decarboxylase-like [Nicotiana sylvestris]
COGYP_005443031.16E-99putative aromatic amino acid decarboxylase
Swissprottr|P17770|DDC_CATRO2E-173Aromatic-L-amino-acid decarboxylase
trEMBLtr|P93083|P93083_CAMAC0Tryptophan decarboxylase {ECO:0000313|EMBL:AAB39709.1}
TAIR10AT2G20340.11E-56Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7381753573818674+
GWHAAZE00000001mRNA7381753573818674+
GWHAAZE00000001exon7381753573818063+
GWHAAZE00000001exon7381820573818674+
GWHAAZE00000001CDS7381753573818063+
GWHAAZE00000001CDS7381820573818674+
Transcript Sequence

Network for GWHGAAZE002257

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0230GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups GOslim:molecular_function
GO:0006520 cellular amino acid metabolic process GOslim:biological_process
GO:0019752 carboxylic acid metabolic process GOslim:biological_process
map00965 Betalain biosynthesis
map00901 Indole alkaloid biosynthesis
map04726 Serotonergic synapse
GO:0016831 carboxy-lyase activity GOslim:molecular_function
Ubiquitin_DWD family Ubiquitin_DWD family
map04728 Dopaminergic synapse
map00380 Tryptophan metabolism
map00360 Phenylalanine metabolism
map00950 Isoquinoline alkaloid biosynthesis
map04361 Axon regeneration
map00350 Tyrosine metabolism


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00282.20Pyridoxal_deC1763325.50E-54
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01593DDC, TDC Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Tyrosine metabolismmap00350
Phenylalanine metabolismmap00360
Tryptophan metabolismmap00380
Indole alkaloid biosynthesismap00901
Isoquinoline alkaloid biosynthesismap00950
Betalain biosynthesismap00965
Dopaminergic synapsemap04728
Serotonergic synapsemap04726
Axon regenerationmap04361

Gene Ontology

GO term OntologyName
GO:0019752biological_processcarboxylic acid metabolic process
GO:0006520biological_processcellular amino acid metabolic process
GO:0003824molecular_functioncatalytic activity
GO:0016831molecular_functioncarboxy-lyase activity
GO:0030170molecular_functionpyridoxal phosphate binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.279
SRR3591706second leaf0.195
SRR3591707mature leaf0.077
SRR3591708Shoot apex0.000
SRR3591709Stem0.523
SRR3591710White floral bud156.605
SRR3591711White flower78.873
SRR3591712Green floral bud12.950
SRR3591713Yellow flower347.043
SRP173429 SRR8316895Juvenile bud stage 0.000
SRR8316896Juvenile bud stage 0.167
SRR8316897Juvenile bud stage 0.113
SRR8316894Third green stage 0.000
SRR8316900Third green stage 0.058
SRR8316901Third green stage 0.287
SRR8316898Complete white stage 0.961
SRR8316899Complete white stage 0.203
SRR8316903Complete white stage 1.222
SRR8316902Silver flowering stage7.112
SRR8316904Silver flowering stage10.863
SRR8316905Silver flowering stage6.523
SRR8316906Gold flowering stage 27.296
SRR8316907Gold flowering stage 52.986
SRR8316908Gold flowering stage 9.352
SRP132670SRR6706286Control7.966
SRR6706287Light intensity 50%9.953
SRR6706288Light intensity 20%0.523
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.078
CNS0095593Slightly white alabastrum(diploid) 20.074
CNS0095594Slightly white alabastrum(diploid) 30.275
CNS0095595Whole white alabastrum(diploid) 20.000
CNS0095596Whole white alabastrum(diploid) 30.094
CNS0095597Whole white alabastrum(diploid) 40.239
CNS0095598Silvery flower (diploied) 17.699
CNS0095599Silvery flower (diploied) 219.456
CNS0095600Silvery flower (diploied) 331.300
CNS0095601Golden flower (diploid) 15.589
CNS0095602Golden flower (diploid) 234.945
CNS0095603Golden flower (diploid) 331.903
CNS0095604Slightly white alabastrum(tetraploid) 10.122
CNS0095605Slightly white alabastrum(tetraploid) 20.104
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.165
CNS0095608Whole white alabastrum(tetraploid) 20.056
CNS0095609Whole white alabastrum(tetraploid) 30.378
CNS0095610Silvery flower (diploied) 110.512
CNS0095611Silvery flower (diploied) 21.873
CNS0095612Silvery flower (diploied) 326.736
CNS0095613Golden flower (tetraploid) 17.938
CNS0095614Golden flower (tetraploid) 210.579
CNS0095615Golden flower (tetraploid) 314.390
CRA001975CRR073297Stem 10.145
CRR073298Stem 20.010
CRR073299Stem 30.028
CRR073300Leaf 10.249
CRR073301Leaf 20.487
CRR073302Leaf 30.642
CRR073303Juvenile bud 10.016
CRR073304Juvenile bud 23.149
CRR073305Juvenile bud 30.025
CRR073306Third green 137.944
CRR073307Third green 285.587
CRR073308Third green 339.212
CRR073309Second white 157.106
CRR073310Second white 254.212
CRR073311Second white 384.879
CRR073312Silver flowering 1149.526
CRR073313Silver flowering 2217.493
CRR073314Silver flowering 3207.998
CRR073315Gold flowering 10.034
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.066
CRR073320Tawny withering 30.000