Detail information of GWHGAAZE002301


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010657340.10PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Vitis vinifera]
COGYP_001154790.12E-10nuclear protein SET
Swissprottr|O23372|ATXR3_ARATH0Probable histone-lysine N-methyltransferase ATXR3
trEMBLtr|A0A061E3M9|A0A061E3M9_THECC0SET domain protein 2 isoform 1 {ECO:0000313|EMBL:EOX99202.1}
TAIR10AT4G15180.10SET domain protein 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7527624875292447+
GWHAAZE00000001mRNA7527624875292447+
GWHAAZE00000001exon7527624875278384+
GWHAAZE00000001exon7527875875278814+
GWHAAZE00000001exon7528032875281500+
GWHAAZE00000001exon7528204275282412+
GWHAAZE00000001exon7528284775283377+
GWHAAZE00000001exon7528373075283830+
GWHAAZE00000001exon7528547775286518+
GWHAAZE00000001exon7528671475286785+
GWHAAZE00000001exon7528777775287887+
GWHAAZE00000001exon7528797375288073+
GWHAAZE00000001exon7528827375288372+
GWHAAZE00000001exon7528848575288580+
GWHAAZE00000001exon7528875675288923+
GWHAAZE00000001exon7528901575289140+
GWHAAZE00000001exon7528938775289440+
GWHAAZE00000001exon7528960375289850+
GWHAAZE00000001exon7528993875290046+
GWHAAZE00000001exon7529074375290958+
GWHAAZE00000001exon7529227175292447+
GWHAAZE00000001CDS7527624875278384+
GWHAAZE00000001CDS7527875875278814+
GWHAAZE00000001CDS7528032875281500+
GWHAAZE00000001CDS7528204275282412+
GWHAAZE00000001CDS7528284775283377+
GWHAAZE00000001CDS7528373075283830+
GWHAAZE00000001CDS7528547775286518+
GWHAAZE00000001CDS7528671475286785+
GWHAAZE00000001CDS7528777775287887+
GWHAAZE00000001CDS7528797375288073+
GWHAAZE00000001CDS7528827375288372+
GWHAAZE00000001CDS7528848575288580+
GWHAAZE00000001CDS7528875675288923+
GWHAAZE00000001CDS7528901575289140+
GWHAAZE00000001CDS7528938775289440+
GWHAAZE00000001CDS7528960375289850+
GWHAAZE00000001CDS7528993875290046+
GWHAAZE00000001CDS7529074375290958+
GWHAAZE00000001CDS7529227175292447+
Transcript Sequence

Network for GWHGAAZE002301

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00856.29SET187319282.60E-10
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySET

KEGG pathway

KO Enzyme pathway mapID
K22748ATXR3, SDG2 Metabolic pathways map01100
Lysine degradationmap00310

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf30.683
SRR3591706second leaf22.332
SRR3591707mature leaf21.003
SRR3591708Shoot apex27.766
SRR3591709Stem30.842
SRR3591710White floral bud28.300
SRR3591711White flower37.246
SRR3591712Green floral bud23.073
SRR3591713Yellow flower26.525
SRP173429 SRR8316895Juvenile bud stage 16.837
SRR8316896Juvenile bud stage 24.577
SRR8316897Juvenile bud stage 11.021
SRR8316894Third green stage 10.592
SRR8316900Third green stage 20.312
SRR8316901Third green stage 21.646
SRR8316898Complete white stage 4.604
SRR8316899Complete white stage 19.037
SRR8316903Complete white stage 19.634
SRR8316902Silver flowering stage11.479
SRR8316904Silver flowering stage20.079
SRR8316905Silver flowering stage8.881
SRR8316906Gold flowering stage 27.162
SRR8316907Gold flowering stage 28.840
SRR8316908Gold flowering stage 28.622
SRP132670SRR6706286Control26.582
SRR6706287Light intensity 50%29.602
SRR6706288Light intensity 20%30.197
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.514
CNS0095593Slightly white alabastrum(diploid) 211.204
CNS0095594Slightly white alabastrum(diploid) 311.804
CNS0095595Whole white alabastrum(diploid) 210.583
CNS0095596Whole white alabastrum(diploid) 37.165
CNS0095597Whole white alabastrum(diploid) 410.387
CNS0095598Silvery flower (diploied) 118.701
CNS0095599Silvery flower (diploied) 212.473
CNS0095600Silvery flower (diploied) 330.236
CNS0095601Golden flower (diploid) 114.233
CNS0095602Golden flower (diploid) 231.521
CNS0095603Golden flower (diploid) 330.386
CNS0095604Slightly white alabastrum(tetraploid) 114.355
CNS0095605Slightly white alabastrum(tetraploid) 211.367
CNS0095606Slightly white alabastrum(tetraploid) 334.596
CNS0095607Whole white alabastrum(tetraploid) 110.535
CNS0095608Whole white alabastrum(tetraploid) 28.502
CNS0095609Whole white alabastrum(tetraploid) 320.150
CNS0095610Silvery flower (diploied) 132.136
CNS0095611Silvery flower (diploied) 228.032
CNS0095612Silvery flower (diploied) 325.721
CNS0095613Golden flower (tetraploid) 116.369
CNS0095614Golden flower (tetraploid) 225.817
CNS0095615Golden flower (tetraploid) 336.502
CRA001975CRR073297Stem 125.842
CRR073298Stem 221.792
CRR073299Stem 315.390
CRR073300Leaf 122.251
CRR073301Leaf 218.342
CRR073302Leaf 312.889
CRR073303Juvenile bud 112.627
CRR073304Juvenile bud 210.347
CRR073305Juvenile bud 322.234
CRR073306Third green 18.446
CRR073307Third green 26.312
CRR073308Third green 310.558
CRR073309Second white 16.076
CRR073310Second white 213.480
CRR073311Second white 317.098
CRR073312Silver flowering 113.370
CRR073313Silver flowering 212.610
CRR073314Silver flowering 310.822
CRR073315Gold flowering 15.432
CRR073316Gold flowering 212.661
CRR073317Gold flowering 33.999
CRR073318Tawny withering 113.490
CRR073319Tawny withering 213.174
CRR073320Tawny withering 312.565