Gene detail

Detail information of GWHGAAZE002319

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP20342.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|O23044\|PER3_ARATH	3E-167	Peroxidase 3 (Precursor)
trEMBL	tr\|A0A068VIB0\|A0A068VIB0_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_1114 {ECO:0000313\|EMBL:CDP20342.1}
TAIR10	AT1G05260.1	9E-132	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	75648963	75651975	-
GWHAAZE00000001	mRNA	75648963	75651975	-
GWHAAZE00000001	exon	75648963	75649378	-
GWHAAZE00000001	exon	75650748	75650910	-
GWHAAZE00000001	exon	75651023	75651220	-
GWHAAZE00000001	exon	75651766	75651975	-
GWHAAZE00000001	CDS	75651766	75651975	-
GWHAAZE00000001	CDS	75651023	75651220	-
GWHAAZE00000001	CDS	75650748	75650910	-
GWHAAZE00000001	CDS	75648963	75649378	-

Transcript Sequence
>GWHTAAZE002323 ATGAGGAGTTTTGCCTATTTTGGGATAGTGATCTTGGGTTTTTTGGGGCTTGTGGGCTCCATTCAAGCTGATTTGCAAATGGGTTTTTATTCAAACAGTTGCCCAAAAGCTGAGAAGATTGTGCAAGACTATGTCCATGAACACATCCACAATGCCCCTACTGTGGCAGCTGCCTTGTTAAGAATGCACTTCCATGATTGTTTTGTGAGGGGTTGTGATGGATCAGTGCTTTTGAATTTCACTTCAAGTTCGGGGAATCAAACAGAGAAGACTGCGGCTCCAAATTTGACACTTAGGAGCTTTGACTTTGTTGACAGAGTGAAGAGCTTGCTTGAAGCAGAATGCCCTGGCATTGTTTCCTGTGCAGATACACTTGCTCTGGTTGCAAGAGACTCTGTTGTTGCCACTGGGGGTCCAAGTTGGAGGGTTCCTACTGGAAGAAGAGATGGGGCGATCTCAAATGCCACTGAAGCTTTGGATAACATCCCTGCTCCAACTATGAATTTCTCCAGTCTGCAAACATCTTTTGCTAATAAAGGGCTTGATCTAAGGGATCTGGTTTTGTTATCTGGTGCGCACACAATCGGAATCTCACGCTGTTCATCCTTCTCGAGCCGATTGTATAACTTCACTGGAGTGGGCGACCAAGACCCATCTTTAGACAGCGAATACGCAGCCAATCTCAAAGCTAACAAATGCCGATCCCTAGCTGATAACACGACCATTGTAGAAATGGATCCAGGCAGTTTCAGAACCTTTGATCTCAGCTATTACACCCAATTGCGCAAGAGAAGAGGTCTGTTCCAATCCGACGCAGCTTTGACCACCAACTCCACTAGCAGTGCAGTAATTGATCAGCTTCTTCAAGGTTCGGTCCAGAGTTTCTTCAGTGAATTTGCCAATTCCATGGAAAAAATGGGTCAGATTGATGTTAAGACCGGGTCTTCGGGTGAGATTCGGAGACGGTGTGCACTTGTTAATAGTTAA

Network for GWHGAAZE002319

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	42	286	4.50E-73

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00430	E1.11.1.7	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0042744	biological_process	hydrogen peroxide catabolic process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.574
	SRR3591706	second leaf	0.440
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	2.113
	SRR3591709	Stem	3.747
	SRR3591710	White floral bud	0.501
	SRR3591711	White flower	0.226
	SRR3591712	Green floral bud	0.435
	SRR3591713	Yellow flower	0.104
SRP173429	SRR8316895	Juvenile bud stage	0.044
	SRR8316896	Juvenile bud stage	0.150
	SRR8316897	Juvenile bud stage	0.312
	SRR8316894	Third green stage	0.069
	SRR8316900	Third green stage	0.065
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.093
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.073
	SRR8316904	Silver flowering stage	0.097
	SRR8316905	Silver flowering stage	0.035
	SRR8316906	Gold flowering stage	0.194
	SRR8316907	Gold flowering stage	0.104
	SRR8316908	Gold flowering stage	0.229
SRP132670	SRR6706286	Control	0.181
	SRR6706287	Light intensity 50%	0.156
	SRR6706288	Light intensity 20%	0.253
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.327
	CNS0095593	Slightly white alabastrum(diploid) 2	0.182
	CNS0095594	Slightly white alabastrum(diploid) 3	0.131
	CNS0095595	Whole white alabastrum(diploid) 2	0.246
	CNS0095596	Whole white alabastrum(diploid) 3	0.146
	CNS0095597	Whole white alabastrum(diploid) 4	0.109
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.059
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.166
	CNS0095603	Golden flower (diploid) 3	0.012
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.534
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.258
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.243
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.263
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.142
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.076
	CNS0095612	Silvery flower (diploied) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.168
	CRR073298	Stem 2	0.150
	CRR073299	Stem 3	0.124
	CRR073300	Leaf 1	0.216
	CRR073301	Leaf 2	0.089
	CRR073302	Leaf 3	0.496
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.074
	CRR073305	Juvenile bud 3	0.052
	CRR073306	Third green 1	1.006
	CRR073307	Third green 2	0.983
	CRR073308	Third green 3	0.604
	CRR073309	Second white 1	0.117
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	2.976
	CRR073319	Tawny withering 2	1.294
	CRR073320	Tawny withering 3	2.535