Detail information of GWHGAAZE002410


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004140123.11.69357E-39PREDICTED: ring finger protein 26-like [Cucumis sativus]
Swissprottr|Q8LA32|LUL4_ARATH0.00000005Probable E3 ubiquitin-protein ligase LUL4
trEMBLtr|A0A0A0KEL6|A0A0A0KEL6_CUCSA6E-40Uncharacterized protein {ECO:0000313|EMBL:KGN47968.1}
TAIR10AT4G22250.14E-24RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7814229978142604+
GWHAAZE00000001mRNA7814229978142604+
GWHAAZE00000001exon7814229978142604+
GWHAAZE00000001CDS7814229978142604+
Transcript Sequence

Network for GWHGAAZE002410

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13920.7zf-C3HC4_350951.70E-12
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.725
SRR3591706second leaf0.316
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.629
SRR3591709Stem1.578
SRR3591710White floral bud0.523
SRR3591711White flower0.614
SRR3591712Green floral bud0.817
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.741
SRR8316896Juvenile bud stage 0.830
SRR8316897Juvenile bud stage 0.508
SRR8316894Third green stage 0.704
SRR8316900Third green stage 1.017
SRR8316901Third green stage 0.930
SRR8316898Complete white stage 0.152
SRR8316899Complete white stage 2.060
SRR8316903Complete white stage 0.168
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.143
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.333
SRP132670SRR6706286Control1.070
SRR6706287Light intensity 50%2.168
SRR6706288Light intensity 20%1.363
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.792
CNS0095593Slightly white alabastrum(diploid) 22.251
CNS0095594Slightly white alabastrum(diploid) 33.865
CNS0095595Whole white alabastrum(diploid) 20.998
CNS0095596Whole white alabastrum(diploid) 30.475
CNS0095597Whole white alabastrum(diploid) 41.591
CNS0095598Silvery flower (diploied) 11.150
CNS0095599Silvery flower (diploied) 21.745
CNS0095600Silvery flower (diploied) 30.705
CNS0095601Golden flower (diploid) 11.458
CNS0095602Golden flower (diploid) 20.797
CNS0095603Golden flower (diploid) 30.868
CNS0095604Slightly white alabastrum(tetraploid) 10.568
CNS0095605Slightly white alabastrum(tetraploid) 20.386
CNS0095606Slightly white alabastrum(tetraploid) 30.822
CNS0095607Whole white alabastrum(tetraploid) 10.623
CNS0095608Whole white alabastrum(tetraploid) 21.155
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (diploied) 10.000
CNS0095611Silvery flower (diploied) 20.000
CNS0095612Silvery flower (diploied) 30.000
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 11.465
CRR073298Stem 20.774
CRR073299Stem 31.938
CRR073300Leaf 10.413
CRR073301Leaf 22.951
CRR073302Leaf 31.618
CRR073303Juvenile bud 10.500
CRR073304Juvenile bud 20.938
CRR073305Juvenile bud 31.029
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 21.385
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.709
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 12.544
CRR073319Tawny withering 23.080
CRR073320Tawny withering 36.200