Detail information of GWHGAAZE002420


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011085485.10PREDICTED: protein disulfide isomerase-like 2-3 [Sesamum indicum]
COGNP_622856.19E-25thiol-disulfide isomerase
Swissprottr|Q67UF5|PDI23_ORYSJ0Protein disulfide isomerase-like 2-3 (Precursor)
trEMBLtr|G7KH66|G7KH66_MEDTR0Protein disulfide isomerase-like protein {ECO:0000313|EMBL:AES99809.1}
TAIR10AT1G04980.10PDI-like 2-2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7840787678411553+
GWHAAZE00000001mRNA7840787678411553+
GWHAAZE00000001exon7840787678408043+
GWHAAZE00000001exon7840838378408496+
GWHAAZE00000001exon7840889678409053+
GWHAAZE00000001exon7840942578409524+
GWHAAZE00000001exon7840979978409975+
GWHAAZE00000001exon7841032078410465+
GWHAAZE00000001exon7841115978411305+
GWHAAZE00000001exon7841139778411553+
GWHAAZE00000001CDS7840787678408043+
GWHAAZE00000001CDS7840838378408496+
GWHAAZE00000001CDS7840889678409053+
GWHAAZE00000001CDS7840942578409524+
GWHAAZE00000001CDS7840979978409975+
GWHAAZE00000001CDS7841032078410465+
GWHAAZE00000001CDS7841115978411305+
GWHAAZE00000001CDS7841139778411553+
Transcript Sequence

Network for GWHGAAZE002420

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0056map04141 Protein processing in endoplasmic reticulum
GO:0016853 isomerase activity GOslim:molecular_function
map04918 Thyroid hormone synthesis
map03060 Protein export
GO:0045454 cell redox homeostasis GOslim:biological_process


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00085.21Thioredoxin3902.50E-26
PF00085.21Thioredoxin1212192.30E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K09584PDIA6, TXNDC7 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName
GO:0045454biological_processcell redox homeostasis
GO:0016853molecular_functionisomerase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf145.269
SRR3591706second leaf53.217
SRR3591707mature leaf33.598
SRR3591708Shoot apex87.428
SRR3591709Stem49.566
SRR3591710White floral bud74.465
SRR3591711White flower62.736
SRR3591712Green floral bud79.096
SRR3591713Yellow flower182.410
SRP173429 SRR8316895Juvenile bud stage 71.436
SRR8316896Juvenile bud stage 79.217
SRR8316897Juvenile bud stage 40.946
SRR8316894Third green stage 32.703
SRR8316900Third green stage 116.383
SRR8316901Third green stage 98.776
SRR8316898Complete white stage 51.597
SRR8316899Complete white stage 78.224
SRR8316903Complete white stage 77.323
SRR8316902Silver flowering stage54.494
SRR8316904Silver flowering stage84.153
SRR8316905Silver flowering stage48.653
SRR8316906Gold flowering stage 131.209
SRR8316907Gold flowering stage 133.771
SRR8316908Gold flowering stage 96.823
SRP132670SRR6706286Control102.234
SRR6706287Light intensity 50%96.994
SRR6706288Light intensity 20%96.444
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1116.839
CNS0095593Slightly white alabastrum(diploid) 2127.665
CNS0095594Slightly white alabastrum(diploid) 3118.787
CNS0095595Whole white alabastrum(diploid) 286.836
CNS0095596Whole white alabastrum(diploid) 3104.930
CNS0095597Whole white alabastrum(diploid) 483.890
CNS0095598Silvery flower (diploied) 1125.502
CNS0095599Silvery flower (diploied) 287.900
CNS0095600Silvery flower (diploied) 3109.528
CNS0095601Golden flower (diploid) 176.399
CNS0095602Golden flower (diploid) 2196.440
CNS0095603Golden flower (diploid) 3194.400
CNS0095604Slightly white alabastrum(tetraploid) 198.652
CNS0095605Slightly white alabastrum(tetraploid) 294.130
CNS0095606Slightly white alabastrum(tetraploid) 3136.313
CNS0095607Whole white alabastrum(tetraploid) 165.387
CNS0095608Whole white alabastrum(tetraploid) 253.533
CNS0095609Whole white alabastrum(tetraploid) 3169.625
CNS0095610Silvery flower (diploied) 1163.550
CNS0095611Silvery flower (diploied) 294.962
CNS0095612Silvery flower (diploied) 3105.678
CNS0095613Golden flower (tetraploid) 175.212
CNS0095614Golden flower (tetraploid) 2129.062
CNS0095615Golden flower (tetraploid) 3106.880
CRA001975CRR073297Stem 175.704
CRR073298Stem 270.993
CRR073299Stem 384.835
CRR073300Leaf 188.066
CRR073301Leaf 284.679
CRR073302Leaf 3102.052
CRR073303Juvenile bud 197.132
CRR073304Juvenile bud 297.555
CRR073305Juvenile bud 384.562
CRR073306Third green 140.979
CRR073307Third green 258.652
CRR073308Third green 362.155
CRR073309Second white 176.384
CRR073310Second white 253.362
CRR073311Second white 351.373
CRR073312Silver flowering 1165.909
CRR073313Silver flowering 2229.204
CRR073314Silver flowering 3216.305
CRR073315Gold flowering 126.463
CRR073316Gold flowering 236.590
CRR073317Gold flowering 336.184
CRR073318Tawny withering 170.140
CRR073319Tawny withering 247.928
CRR073320Tawny withering 376.258