Gene detail

Detail information of GWHGAAZE002473

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP20931.1	2.00125E-84	hypothetical protein JCGZ_21402 [Jatropha curcas]
Swissprot	tr\|Q06215\|PPO_VICFA	1E-79	Polyphenol oxidase A1, chloroplastic (Precursor)
trEMBL	tr\|A0A067JAU2\|A0A067JAU2_JATCU	7E-85	Uncharacterized protein {ECO:0000313\|EMBL:KDP20931.1}

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	79431120	79432607	+
GWHAAZE00000001	mRNA	79431120	79432607	+
GWHAAZE00000001	exon	79431120	79431531	+
GWHAAZE00000001	exon	79431568	79431796	+
GWHAAZE00000001	exon	79431842	79432607	+
GWHAAZE00000001	CDS	79431120	79431531	+
GWHAAZE00000001	CDS	79431568	79431796	+
GWHAAZE00000001	CDS	79431842	79432607	+

Transcript Sequence
>GWHTAAZE002477 ATGGCTTCTTCTCCTCTTCTTCAAAATCCACTTGTAGCTGTAACCTCTGCTACTAATATTATTAACCCCAATGTACATGCTTTGTCTTCCTCCTCTTGTTATTCTCTCTCCATCTTTGTAAATAATAAAGATAATAACAAGCTGCCCTCCAAACTTTCCGCATATGGAAAGCAGCGCTACCGCCGCCGTAACAACAACATTTCATGCAAATCCACAGCAAATGGTAGTGCTGGTGACCATAAGTTTGATAGGAGGAATGTGCTCCTCGGTTTAGGCGGGCTTTATGGCATCGCCGGCAATCTCAGCCTTGCCAACAATCAATCAGCCATTGCAGTTCCGGTGCCGGGCCCTGACATCAACCGTTGTGGGCCCGCCACCACCCTTCCAAATCCGGATAACGACCCACGTATAGTGGACTACAAGATTCCCACGTGGTCACAGAAAAAAAGGATGAGATCGGCAGCTCAGTGGGTGAGCGACGATTTCCTAGCCAAATATTCGACAGCGATCAAGACGATGAAAACTCTTCCTAAAACCGATCCGCATAACTTCTGGAACCAAGCGATTGTCCACTGCGCTTACTGCAACGGCGCTTACAAACAACTCGGATTCTCAGATCCTGAAACACCTGGTGGTACCAAATGGTACTTGTACTTCTTCGAAAGGATTGTCGCAAAATATACTCGAGGTCTTGAAGGACAGGGTGTCATCGATGAGGACTTTGCTTTGCCATTCTGGAACTGGGACAATGCAACCGGCATGGAGATGCCGTCTATATATCTCGACCCCCATTACGGCCTACACGACTGCTACCGCGACGCGGACCACCTAGACAAGCTTATCGACCTCCGCAACGGCACCTCTAGTACCAATATGTCCCACCAAGAGTGGATAAAGGACAATCTCAGTGTCGTGCATGCCTTCATGTTTCAGGAACAACCTGCCGACTTTTTTGGAGCCGTGTTCAGCGGGGGCGATACTCCCCCAAATAGCGCCGGGTCCATAGAGCGAACCCACAACATGGTGCACAGGTGGACGGGTGATCCGTTCCAACCCCATAACGAGGACATGGGAAACTTTTACTCAGCGGCAAAAGACCCCATCTTTTATGGCCACCACGCAAACATCGATCGCCTTTGGAAGGTGTGGAATACTTTAGATCCGGCAAATAATACGGATGGCGCATACTACAATGATTGGAAAGGCTCCACTTTCCTCTTTATGACGAGGACAGGAAGCTCGTGCGCGTTAAAGTCGGAGATTGCTTGGACACTGATAATCTCGGGTACGAATATGAAAACGTCGACAATCCATGGATTAATGCTACAACGAAATCAAAAACATTTCGTTCACCAATGGCAGCGAGGCCTAAGACCACCGCACCTACTAATCTTGTTTTCCCGGTAA

Network for GWHGAAZE002473

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00264.21	Tyrosinase	215	385	1.50E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00422	E1.10.3.1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Tyrosine metabolism	map00350
		Isoquinoline alkaloid biosynthesis	map00950

Gene Ontology

GO term	Ontology	Name
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.057
	SRR3591706	second leaf	20.339
	SRR3591707	mature leaf	266.301
	SRR3591708	Shoot apex	0.952
	SRR3591709	Stem	0.041
	SRR3591710	White floral bud	38.722
	SRR3591711	White flower	26.199
	SRR3591712	Green floral bud	7.449
	SRR3591713	Yellow flower	17.609
SRP173429	SRR8316895	Juvenile bud stage	1.711
	SRR8316896	Juvenile bud stage	3.237
	SRR8316897	Juvenile bud stage	0.221
	SRR8316894	Third green stage	0.261
	SRR8316900	Third green stage	1.021
	SRR8316901	Third green stage	1.039
	SRR8316898	Complete white stage	2.666
	SRR8316899	Complete white stage	1.193
	SRR8316903	Complete white stage	6.395
	SRR8316902	Silver flowering stage	0.995
	SRR8316904	Silver flowering stage	0.645
	SRR8316905	Silver flowering stage	0.168
	SRR8316906	Gold flowering stage	0.730
	SRR8316907	Gold flowering stage	1.320
	SRR8316908	Gold flowering stage	2.506
SRP132670	SRR6706286	Control	12.460
	SRR6706287	Light intensity 50%	6.542
	SRR6706288	Light intensity 20%	1.705
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	49.746
	CNS0095593	Slightly white alabastrum(diploid) 2	2.211
	CNS0095594	Slightly white alabastrum(diploid) 3	3.085
	CNS0095595	Whole white alabastrum(diploid) 2	1.728
	CNS0095596	Whole white alabastrum(diploid) 3	0.380
	CNS0095597	Whole white alabastrum(diploid) 4	0.924
	CNS0095598	Silvery flower (diploied) 1	2.773
	CNS0095599	Silvery flower (diploied) 2	2.705
	CNS0095600	Silvery flower (diploied) 3	2.578
	CNS0095601	Golden flower (diploid) 1	2.133
	CNS0095602	Golden flower (diploid) 2	4.810
	CNS0095603	Golden flower (diploid) 3	4.903
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.181
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.241
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.122
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.695
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.404
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.650
	CNS0095610	Silvery flower (diploied) 1	6.892
	CNS0095611	Silvery flower (diploied) 2	0.582
	CNS0095612	Silvery flower (diploied) 3	5.611
	CNS0095613	Golden flower (tetraploid) 1	0.388
	CNS0095614	Golden flower (tetraploid) 2	4.179
	CNS0095615	Golden flower (tetraploid) 3	0.085
CRA001975	CRR073297	Stem 1	15.906
	CRR073298	Stem 2	6.489
	CRR073299	Stem 3	3.025
	CRR073300	Leaf 1	1.254
	CRR073301	Leaf 2	2.129
	CRR073302	Leaf 3	1.143
	CRR073303	Juvenile bud 1	0.424
	CRR073304	Juvenile bud 2	4.624
	CRR073305	Juvenile bud 3	0.080
	CRR073306	Third green 1	4.715
	CRR073307	Third green 2	0.647
	CRR073308	Third green 3	0.595
	CRR073309	Second white 1	0.808
	CRR073310	Second white 2	0.422
	CRR073311	Second white 3	0.541
	CRR073312	Silver flowering 1	1.116
	CRR073313	Silver flowering 2	2.212
	CRR073314	Silver flowering 3	2.736
	CRR073315	Gold flowering 1	0.109
	CRR073316	Gold flowering 2	5.332
	CRR073317	Gold flowering 3	47.869
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.022
	CRR073320	Tawny withering 3	0.177