Detail information of GWHGAAZE002476


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010262414.11.6102E-179PREDICTED: exosome complex component RRP42 [Nelumbo nucifera]
COGYP_004004386.15E-40ribosomal RNA-processing protein rrp42
Swissprottr|Q9LDM2|CER7L_ARATH6E-29Protein RRP45A
trEMBLtr|A0A022RSL7|A0A022RSL7_ERYGU1E-175Uncharacterized protein {ECO:0000313|EMBL:EYU42961.1}
TAIR10AT3G07750.22E-1293'-5'-exoribonuclease family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7946385279466933-
GWHAAZE00000001mRNA7946385279466933-
GWHAAZE00000001exon7946680879466933-
GWHAAZE00000001exon7946666479466720-
GWHAAZE00000001exon7946628679466378-
GWHAAZE00000001exon7946557979465657-
GWHAAZE00000001exon7946528279465406-
GWHAAZE00000001exon7946494879465091-
GWHAAZE00000001exon7946385279464392-
GWHAAZE00000001CDS7946680879466933-
GWHAAZE00000001CDS7946666479466720-
GWHAAZE00000001CDS7946628679466378-
GWHAAZE00000001CDS7946557979465657-
GWHAAZE00000001CDS7946528279465406-
GWHAAZE00000001CDS7946494879465091-
GWHAAZE00000001CDS7946415379464392-
GWHAAZE00000001three_prime_UTR7946385279464152-
Transcript Sequence

Network for GWHGAAZE002476

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01138.22RNase_PH301692.60E-26
PF03725.16RNase_PH_C2002631.70E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12589RRP42, EXOSC7 RNA degradation map03018

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf15.719
SRR3591706second leaf9.146
SRR3591707mature leaf13.185
SRR3591708Shoot apex15.070
SRR3591709Stem15.857
SRR3591710White floral bud15.804
SRR3591711White flower16.380
SRR3591712Green floral bud23.002
SRR3591713Yellow flower14.845
SRP173429 SRR8316895Juvenile bud stage 15.079
SRR8316896Juvenile bud stage 21.223
SRR8316897Juvenile bud stage 9.623
SRR8316894Third green stage 8.482
SRR8316900Third green stage 27.340
SRR8316901Third green stage 24.288
SRR8316898Complete white stage 9.232
SRR8316899Complete white stage 29.297
SRR8316903Complete white stage 12.310
SRR8316902Silver flowering stage7.745
SRR8316904Silver flowering stage9.645
SRR8316905Silver flowering stage6.170
SRR8316906Gold flowering stage 22.790
SRR8316907Gold flowering stage 21.217
SRR8316908Gold flowering stage 22.235
SRP132670SRR6706286Control27.032
SRR6706287Light intensity 50%27.167
SRR6706288Light intensity 20%27.924
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.154
CNS0095593Slightly white alabastrum(diploid) 221.462
CNS0095594Slightly white alabastrum(diploid) 320.103
CNS0095595Whole white alabastrum(diploid) 218.911
CNS0095596Whole white alabastrum(diploid) 316.668
CNS0095597Whole white alabastrum(diploid) 415.426
CNS0095598Silvery flower (diploied) 118.615
CNS0095599Silvery flower (diploied) 215.791
CNS0095600Silvery flower (diploied) 318.785
CNS0095601Golden flower (diploid) 118.007
CNS0095602Golden flower (diploid) 216.336
CNS0095603Golden flower (diploid) 315.448
CNS0095604Slightly white alabastrum(tetraploid) 119.957
CNS0095605Slightly white alabastrum(tetraploid) 217.553
CNS0095606Slightly white alabastrum(tetraploid) 329.052
CNS0095607Whole white alabastrum(tetraploid) 111.740
CNS0095608Whole white alabastrum(tetraploid) 216.295
CNS0095609Whole white alabastrum(tetraploid) 323.702
CNS0095610Silvery flower (diploied) 118.596
CNS0095611Silvery flower (diploied) 214.398
CNS0095612Silvery flower (diploied) 315.695
CNS0095613Golden flower (tetraploid) 111.695
CNS0095614Golden flower (tetraploid) 216.799
CNS0095615Golden flower (tetraploid) 311.368
CRA001975CRR073297Stem 122.931
CRR073298Stem 223.579
CRR073299Stem 321.537
CRR073300Leaf 125.959
CRR073301Leaf 224.764
CRR073302Leaf 324.146
CRR073303Juvenile bud 121.776
CRR073304Juvenile bud 219.110
CRR073305Juvenile bud 320.968
CRR073306Third green 15.909
CRR073307Third green 26.646
CRR073308Third green 35.505
CRR073309Second white 113.683
CRR073310Second white 211.898
CRR073311Second white 310.276
CRR073312Silver flowering 18.844
CRR073313Silver flowering 211.315
CRR073314Silver flowering 36.512
CRR073315Gold flowering 115.802
CRR073316Gold flowering 218.399
CRR073317Gold flowering 312.292
CRR073318Tawny withering 121.603
CRR073319Tawny withering 216.486
CRR073320Tawny withering 315.937