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Detail information of GWHGAAZE002476
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
XP_010262414.1
1.6102E-179
PREDICTED: exosome complex component RRP42 [Nelumbo nucifera]
COG
YP_004004386.1
5E-40
ribosomal RNA-processing protein rrp42
Swissprot
tr|Q9LDM2|CER7L_ARATH
6E-29
Protein RRP45A
trEMBL
tr|A0A022RSL7|A0A022RSL7_ERYGU
1E-175
Uncharacterized protein {ECO:0000313|EMBL:EYU42961.1}
TAIR10
AT3G07750.2
2E-129
3'-5'-exoribonuclease family protein
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000001
gene
79463852
79466933
-
GWHAAZE00000001
mRNA
79463852
79466933
-
GWHAAZE00000001
exon
79466808
79466933
-
GWHAAZE00000001
exon
79466664
79466720
-
GWHAAZE00000001
exon
79466286
79466378
-
GWHAAZE00000001
exon
79465579
79465657
-
GWHAAZE00000001
exon
79465282
79465406
-
GWHAAZE00000001
exon
79464948
79465091
-
GWHAAZE00000001
exon
79463852
79464392
-
GWHAAZE00000001
CDS
79466808
79466933
-
GWHAAZE00000001
CDS
79466664
79466720
-
GWHAAZE00000001
CDS
79466286
79466378
-
GWHAAZE00000001
CDS
79465579
79465657
-
GWHAAZE00000001
CDS
79465282
79465406
-
GWHAAZE00000001
CDS
79464948
79465091
-
GWHAAZE00000001
CDS
79464153
79464392
-
GWHAAZE00000001
three_prime_UTR
79463852
79464152
-
Transcript Sequence
>GWHTAAZE002480 ATGGTGGGGCTTTCTATTGGAGAGAAACATTTCATACAGGGTGGCATTGCTCAAGACCTTCGGTCTGATGGTAGAAAAAGGTTAACTTACCGGCCCATTTATGTTGAAACCGGAGTCATTCCTCAGGCGAATGGTTCAGCAAGAGTGAGGATGGGATTAACAGAAGTTATAGTTAGTGTGAAGGCTGAACTTGGGAGACCAACTGCCTCTCAACCTGACAAAGGGAAGATTTCTATATATGTTGACTGCAGTCCCACGGCAGCGCCAATGTTTGAGGGGAGAGGGGGTGAGGAGTTGTCCACAGAACTCTCTGCGGCTCTCCAGCGATGTCTTTTGGGTGGTAAAAGTGGAGCAGGAGCTGGAATCGATCCCTCATCTCTGTCAATTGTGGAAGGGAAGATTTGTTGGGATCTTTATATTGATGGGCTCGTGATTAGTGCAGACGGGAATCTACTGGATTCCTTAGCTGCTGGAATCAAGGCTGCTTTGAGCAATACAGGTATTCCAAAAGTCAATGTGGCAGCCGGTGCCGCTTCTGATGAGCAACCAGAGGTTGATGTGAGTGATGAAGAATTCTTACAATTCGACACCTCCGGTGTACCCGTCATAGTTACTTTAACAAAGATCGGGAGGCACTATATTGTAGATGCAACATCGGAAGAAGAGTCGCAAATGAGCTCAGCTCTCTCTGTCTCCGTGAATCGGCACGGACGCATATGCGGGATGACCAAACGAGGTGGGGCGGGTCTAGATCCGAGCGTCATACTTGATATGATATCTGTGGCTAAACATGTGAGTGAGCAGTTAATTAACAAATTAGATTCTGAAATAGCCGCTGCTGAAGCCACTGAAGAGGAGTTATAACCTTCGTTGATTGATTCTCAGTGTTACTACTAAGTTTAGTAATTTGGCGAAAATGTATAACTTAGTGTATTAAATGAATGTACTAATTTTTTTTGGCAGTGTTATATTTTTAAGGTCCTTTGGGAGATCTCATACAGAGTTTTGTTCGTTTGGTTAATGAGGTGTTTAGTTTGTATTATACACTTGTTTCCTTAGGTCTGAGTTAACCTTTATTTCTTAGAACTACTAAATTAAGAGGCTGTTTTTTTATTCAGCATTTGAATGCTTAATTCTGAATAGAAAATTTATTTTGTTCTTTTTA
Network for GWHGAAZE002476
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF01138.22
RNase_PH
30
169
2.60E-26
PF03725.16
RNase_PH_C
200
263
1.70E-10
Protein Sequence
>GWHPAAZE002478 MVGLSIGEKHFIQGGIAQDLRSDGRKRLTYRPIYVETGVIPQANGSARVRMGLTEVIVSVKAELGRPTASQPDKGKISIYVDCSPTAAPMFEGRGGEELSTELSAALQRCLLGGKSGAGAGIDPSSLSIVEGKICWDLYIDGLVISADGNLLDSLAAGIKAALSNTGIPKVNVAAGAASDEQPEVDVSDEEFLQFDTSGVPVIVTLTKIGRHYIVDATSEEESQMSSALSVSVNRHGRICGMTKRGGAGLDPSVILDMISVAKHVSEQLINKLDSEIAAAEATEEEL
Gene family
Gene family
subfamily
--
--
KEGG pathway
KO
Enzyme
pathway
mapID
K12589
RRP42, EXOSC7
RNA degradation
map03018
Gene Ontology
GO term
Ontology
Name
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
15.719
SRR3591706
second leaf
9.146
SRR3591707
mature leaf
13.185
SRR3591708
Shoot apex
15.070
SRR3591709
Stem
15.857
SRR3591710
White floral bud
15.804
SRR3591711
White flower
16.380
SRR3591712
Green floral bud
23.002
SRR3591713
Yellow flower
14.845
SRP173429
SRR8316895
Juvenile bud stage
15.079
SRR8316896
Juvenile bud stage
21.223
SRR8316897
Juvenile bud stage
9.623
SRR8316894
Third green stage
8.482
SRR8316900
Third green stage
27.340
SRR8316901
Third green stage
24.288
SRR8316898
Complete white stage
9.232
SRR8316899
Complete white stage
29.297
SRR8316903
Complete white stage
12.310
SRR8316902
Silver flowering stage
7.745
SRR8316904
Silver flowering stage
9.645
SRR8316905
Silver flowering stage
6.170
SRR8316906
Gold flowering stage
22.790
SRR8316907
Gold flowering stage
21.217
SRR8316908
Gold flowering stage
22.235
SRP132670
SRR6706286
Control
27.032
SRR6706287
Light intensity 50%
27.167
SRR6706288
Light intensity 20%
27.924
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
20.154
CNS0095593
Slightly white alabastrum(diploid) 2
21.462
CNS0095594
Slightly white alabastrum(diploid) 3
20.103
CNS0095595
Whole white alabastrum(diploid) 2
18.911
CNS0095596
Whole white alabastrum(diploid) 3
16.668
CNS0095597
Whole white alabastrum(diploid) 4
15.426
CNS0095598
Silvery flower (diploied) 1
18.615
CNS0095599
Silvery flower (diploied) 2
15.791
CNS0095600
Silvery flower (diploied) 3
18.785
CNS0095601
Golden flower (diploid) 1
18.007
CNS0095602
Golden flower (diploid) 2
16.336
CNS0095603
Golden flower (diploid) 3
15.448
CNS0095604
Slightly white alabastrum(tetraploid) 1
19.957
CNS0095605
Slightly white alabastrum(tetraploid) 2
17.553
CNS0095606
Slightly white alabastrum(tetraploid) 3
29.052
CNS0095607
Whole white alabastrum(tetraploid) 1
11.740
CNS0095608
Whole white alabastrum(tetraploid) 2
16.295
CNS0095609
Whole white alabastrum(tetraploid) 3
23.702
CNS0095610
Silvery flower (diploied) 1
18.596
CNS0095611
Silvery flower (diploied) 2
14.398
CNS0095612
Silvery flower (diploied) 3
15.695
CNS0095613
Golden flower (tetraploid) 1
11.695
CNS0095614
Golden flower (tetraploid) 2
16.799
CNS0095615
Golden flower (tetraploid) 3
11.368
CRA001975
CRR073297
Stem 1
22.931
CRR073298
Stem 2
23.579
CRR073299
Stem 3
21.537
CRR073300
Leaf 1
25.959
CRR073301
Leaf 2
24.764
CRR073302
Leaf 3
24.146
CRR073303
Juvenile bud 1
21.776
CRR073304
Juvenile bud 2
19.110
CRR073305
Juvenile bud 3
20.968
CRR073306
Third green 1
5.909
CRR073307
Third green 2
6.646
CRR073308
Third green 3
5.505
CRR073309
Second white 1
13.683
CRR073310
Second white 2
11.898
CRR073311
Second white 3
10.276
CRR073312
Silver flowering 1
8.844
CRR073313
Silver flowering 2
11.315
CRR073314
Silver flowering 3
6.512
CRR073315
Gold flowering 1
15.802
CRR073316
Gold flowering 2
18.399
CRR073317
Gold flowering 3
12.292
CRR073318
Tawny withering 1
21.603
CRR073319
Tawny withering 2
16.486
CRR073320
Tawny withering 3
15.937