Gene detail

Detail information of GWHGAAZE002496

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009361536.1	0	PREDICTED: acetyl-CoA acetyltransferase, cytosolic 1 [Pyrus x bretschneideri]
COG	YP_003126048.1	3E-161	acetyl-CoA acetyltransferase
Swissprot	tr\|Q9FIK7\|THIC2_ARATH	0	Probable acetyl-CoA acetyltransferase, cytosolic 2
trEMBL	tr\|M5WS77\|M5WS77_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ16667.1}
TAIR10	AT5G48230.2	0	acetoacetyl-CoA thiolase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	79844195	79849592	+
GWHAAZE00000001	mRNA	79844195	79849592	+
GWHAAZE00000001	exon	79844195	79844243	+
GWHAAZE00000001	exon	79844762	79844860	+
GWHAAZE00000001	exon	79844966	79845139	+
GWHAAZE00000001	exon	79845265	79845370	+
GWHAAZE00000001	exon	79845732	79845870	+
GWHAAZE00000001	exon	79846686	79846763	+
GWHAAZE00000001	exon	79846845	79846910	+
GWHAAZE00000001	exon	79847180	79847265	+
GWHAAZE00000001	exon	79848061	79848160	+
GWHAAZE00000001	exon	79848281	79848391	+
GWHAAZE00000001	exon	79848641	79848682	+
GWHAAZE00000001	exon	79848888	79848974	+
GWHAAZE00000001	exon	79849143	79849252	+
GWHAAZE00000001	exon	79849508	79849592	+
GWHAAZE00000001	CDS	79844195	79844243	+
GWHAAZE00000001	CDS	79844762	79844860	+
GWHAAZE00000001	CDS	79844966	79845139	+
GWHAAZE00000001	CDS	79845265	79845370	+
GWHAAZE00000001	CDS	79845732	79845870	+
GWHAAZE00000001	CDS	79846686	79846763	+
GWHAAZE00000001	CDS	79846845	79846910	+
GWHAAZE00000001	CDS	79847180	79847265	+
GWHAAZE00000001	CDS	79848061	79848160	+
GWHAAZE00000001	CDS	79848281	79848391	+
GWHAAZE00000001	CDS	79848641	79848682	+
GWHAAZE00000001	CDS	79848888	79848974	+
GWHAAZE00000001	CDS	79849143	79849232	+
GWHAAZE00000001	three_prime_UTR	79849233	79849252	+
GWHAAZE00000001	three_prime_UTR	79849508	79849592	+

Transcript Sequence
>GWHTAAZE002500 ATGGCTCCACCGTCAGCTGTAGATTCTTCGGATTCAATTAAGCCTAGAGATGTTTGTATTGTCGGTGTTGTGCGTACGCCAATGGGTTCATTTCTTGGTTATCTTTCATCCTTACCAGCCACCAAACTTGGATCTATAGCAATTGCTAGTGCTCTTAAAAGGGCAAATGTTGATCCATCACTTGTAGAAGAAGTTTTCTTCGGAAATGTTCTCAGTGCAAATTTGGGCCAGGCTCCTGCTAGACAAGCTGCATTAGGTGCAGGGATACCTAATACAGTGGTCTGCACAACTATTAACAAAGTTTGTGCTTCAGGGATGAAAGCAACTATGCTTGCAGCACAGAGTATCCAGTTGGGCATTAACGACGTCGTTGTGGCTGGTGGCATGGAAAGCATGTCTAATGTTCCTAAATACCTAGCAGAAGCAAGGAAGGGATCTCGACTTGGCCATGATTCTGTTGTTGATGGAATGTTAAAAGATGGGTTGTGGGATGTTTACAATGATTATGGTATGGGAAATTGTGCTGAACTTTGTGCTGAACAACATGTAATAACAAGAGAGGAGCAGGATAACTATGCCATTCAGAGTTTTGAGCGTGGTATTGCTGCCCAAGATAGTGGTGCCTTTCAGTGGGAAATAGCTCCGGTTGAAGTTCCAGGGGGAAGAGGAAAACCATCAACAATTGTTGACAAGGATGAAGGTCTTGGAAAGCTTGACGCTGCGAAATTAAGGAAACTCCGACCAAGTTTCAAGGAGAGTGGTGGTAGCGTTACTGCTGGCAATGCTTCTAGTATAAGTGATGGGGCTGCTGCGCTAATCTTAGTTAGTGGAGAGAAGGCACTTAAACTTGGGCTTCAAGTGATTGCAAAGATCACAGGATACGCTGATGCCGCCCAGGCACCAGAGTTATTTACTACTGCACCAGCCCTTGCTATTCCAAAAGCTATTTCAAGGGCTGGATTAGACGCTTCTAAAGTCGATTACTATGAGATCAATGAAGCCTTTGCGGTTGTGGCCCTTGCGAATCAAAAACTCCTTGGTCTTAACCCGGAAAAAGTGAATATACACGGGGGAGCTGTATCTTTGGGTCATCCTCTAGGCTGCAGCGGGGCCCGTATCTTGGTCACCCTTTTGGGGGTTTTAAGGCAAAAGAACGGGAAATATGGAGTTGGTGGTGTGTGCAATGGAGGAGGAGGTGCATCAGCCCTTGTCGTAGAGCTCATGTAATCCTTTTTCCGTTTAATCAGGCCAGTTTACGAAAGAGATGGTGTGAAGACTTGAATCCCCATCATCTTGAGTTCAGATGTTGTGTGCTATTTGTTTAGTCTCCAT

Network for GWHGAAZE002496

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00108.24	Thiolase_N	18	276	4.40E-92
PF02803.19	Thiolase_C	286	406	1.30E-44

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00626	ACAT, atoB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Fatty acid metabolism	map01212
		Pyruvate metabolism	map00620
		Glyoxylate and dicarboxylate metabolism	map00630
		Propanoate metabolism	map00640
		Butanoate metabolism	map00650
		Carbon fixation pathways in prokaryotes	map00720
		Fatty acid degradation	map00071
		Synthesis and degradation of ketone bodies	map00072
		Valine, leucine and isoleucine degradation	map00280
		Lysine degradation	map00310
		Tryptophan metabolism	map00380
		Terpenoid backbone biosynthesis	map00900
		Benzoate degradation	map00362
		Two-component system	map02020
		Fat digestion and absorption	map04975

Gene Ontology

GO term	Ontology	Name
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	134.221
	SRR3591706	second leaf	94.776
	SRR3591707	mature leaf	26.893
	SRR3591708	Shoot apex	137.357
	SRR3591709	Stem	120.812
	SRR3591710	White floral bud	314.825
	SRR3591711	White flower	729.691
	SRR3591712	Green floral bud	175.252
	SRR3591713	Yellow flower	664.774
SRP173429	SRR8316895	Juvenile bud stage	91.805
	SRR8316896	Juvenile bud stage	108.401
	SRR8316897	Juvenile bud stage	40.423
	SRR8316894	Third green stage	44.931
	SRR8316900	Third green stage	200.569
	SRR8316901	Third green stage	200.518
	SRR8316898	Complete white stage	165.770
	SRR8316899	Complete white stage	241.644
	SRR8316903	Complete white stage	207.826
	SRR8316902	Silver flowering stage	227.929
	SRR8316904	Silver flowering stage	266.880
	SRR8316905	Silver flowering stage	165.638
	SRR8316906	Gold flowering stage	547.164
	SRR8316907	Gold flowering stage	512.434
	SRR8316908	Gold flowering stage	495.332
SRP132670	SRR6706286	Control	252.248
	SRR6706287	Light intensity 50%	258.211
	SRR6706288	Light intensity 20%	259.853
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	107.174
	CNS0095593	Slightly white alabastrum(diploid) 2	129.957
	CNS0095594	Slightly white alabastrum(diploid) 3	116.990
	CNS0095595	Whole white alabastrum(diploid) 2	113.969
	CNS0095596	Whole white alabastrum(diploid) 3	114.802
	CNS0095597	Whole white alabastrum(diploid) 4	115.974
	CNS0095598	Silvery flower (diploied) 1	127.511
	CNS0095599	Silvery flower (diploied) 2	149.154
	CNS0095600	Silvery flower (diploied) 3	306.279
	CNS0095601	Golden flower (diploid) 1	180.679
	CNS0095602	Golden flower (diploid) 2	280.267
	CNS0095603	Golden flower (diploid) 3	273.134
	CNS0095604	Slightly white alabastrum(tetraploid) 1	127.574
	CNS0095605	Slightly white alabastrum(tetraploid) 2	106.271
	CNS0095606	Slightly white alabastrum(tetraploid) 3	176.634
	CNS0095607	Whole white alabastrum(tetraploid) 1	92.756
	CNS0095608	Whole white alabastrum(tetraploid) 2	94.235
	CNS0095609	Whole white alabastrum(tetraploid) 3	183.971
	CNS0095610	Silvery flower (diploied) 1	307.630
	CNS0095611	Silvery flower (diploied) 2	284.280
	CNS0095612	Silvery flower (diploied) 3	346.021
	CNS0095613	Golden flower (tetraploid) 1	352.168
	CNS0095614	Golden flower (tetraploid) 2	413.244
	CNS0095615	Golden flower (tetraploid) 3	301.664
CRA001975	CRR073297	Stem 1	147.782
	CRR073298	Stem 2	134.892
	CRR073299	Stem 3	133.210
	CRR073300	Leaf 1	210.769
	CRR073301	Leaf 2	197.928
	CRR073302	Leaf 3	213.491
	CRR073303	Juvenile bud 1	237.028
	CRR073304	Juvenile bud 2	356.454
	CRR073305	Juvenile bud 3	239.704
	CRR073306	Third green 1	493.087
	CRR073307	Third green 2	323.222
	CRR073308	Third green 3	357.799
	CRR073309	Second white 1	565.771
	CRR073310	Second white 2	391.488
	CRR073311	Second white 3	438.944
	CRR073312	Silver flowering 1	506.682
	CRR073313	Silver flowering 2	489.949
	CRR073314	Silver flowering 3	463.337
	CRR073315	Gold flowering 1	33.764
	CRR073316	Gold flowering 2	43.238
	CRR073317	Gold flowering 3	44.256
	CRR073318	Tawny withering 1	126.430
	CRR073319	Tawny withering 2	130.120
	CRR073320	Tawny withering 3	127.506