Gene detail

Detail information of GWHGAAZE002549

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010910928.1	PREDICTED: polyphenol oxidase, chloroplastic-like [Elaeis guineensis]
Swissprot	tr\|P43309\|PPO_MALDO	Polyphenol oxidase, chloroplastic (Precursor)
trEMBL	tr\|A0A061GMJ6\|A0A061GMJ6_THECC	Uncharacterized protein {ECO:0000313\|EMBL:EOY28324.1}

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	81081778	81083515	+
GWHAAZE00000001	mRNA	81081778	81083515	+
GWHAAZE00000001	exon	81081778	81082866	+
GWHAAZE00000001	exon	81082955	81083515	+
GWHAAZE00000001	CDS	81081778	81082866	+
GWHAAZE00000001	CDS	81082955	81083515	+

Transcript Sequence
>GWHTAAZE002553 ATGGCTACTTCTCTTCAAGCTCCAATGGCCAATGCCTACTCTTCCTCCTCTTTGTATTCTCGCTCCATTCTTGCTAAGCCCTCAAAACTTTCCATCAATGGAAAACAATACCATACCTTTAAAGTTTCATGCAAATCCACAAATGATGATAAGAATAGTGAAGAAACTTCCCAATCTAACAAGTTTGATAGAAGAAATGTGCTTCTTGGCCTCAGTGGCCTCTATGGCGCTGCCAATATGAGCATCAACCACCTTGCAGTTGCTGCTCTAGTGGTGGCACCAGACATTTCAAAATGCGGCCCCTCAGAGTACTCCAACAGGACCGTTATAAACACTGATTGTTGCCCACCATCAGCCACGAATATCATTGACTTTAAATTCCCTAAACCTTCCAAAGTTATGCGAGTTAGACCCTCGGCTCATTTGGCTAGCGACGAGTACGTAGCCAAGTTTTCGAAAGCCATCGAGCTCATAAAGGCCCTGCCTGAGGATGACCCACATAACTTCATGCAACAAGCTAGGGTCCACTGCGCTTATTGCAATGGCGCATACCAACAAATCAGGTTCCCGGACCTAGATCTTCAAATCCACAACTCTTGGTTCTTTTACCTATTCCATCGACGGTACTTGTACTTTTACGAGAAGATCTTGGCAAAATTAATCGGGGATCCTTCCTTCGCTTTGCCGTATGGGAACTGGGACACGCCACATGGTATGCAGGTTCCATCCATGTTCCTCAACACGTCATCATCGCTCTACAACGAGCACCGTAATGCAAGCCACCTCCCAATGGTGATTGATCTCGGCTATAACGGTGTGGATACCGATACCACAAACGTGGACAAAATAACGGCCAATCTCGCCATTATGTATCGGCAAATGGTTCCTAATGCCAGTACTGCGAAACTTTTCTTTGGGAGTGCATACCGGGCTGGGGACAGTCCAAGCCCTGGGGCGGGGTCCATCGAGACCACGCCTCACACTGCGGTCCATAGATGGATTGGAGATCCAAATCAACCCAATGGCGAGGACCTCGGGAACTTCTACTCAGCTGGTAGGGACACGCTGTTCTACTGCCACCATGCAAATGATGCGCAGCTAGTACAGGTCAAAGTCGAGGACTGCCTCGATAACAGAAAACTAGGGTTCGAGTTCCAGAAAGTAGACACGCCATGGCTGCAGAGCAAGCCAACGCCACGGCCAACCAATTCCACTGTGGCAGCGATATTTACAGCCCCGGCTACACTAGTGGCGTTTCCAGTGACACTGGAGAACGTGGTCAAAGTGGTGGTGAAGAGGTCAAAGGTATCGAGGACGGATAAACAAAAGGAGGCAGAAGAAGAGATTCTCGTGATCGAAGGGATCGAATATGATCGAAAGAAGTACGTGAAGTTCGATGTTTTTGTGAATGACGAGGATGACGAGGGGAGTGCAGCGGCCGATGAAACGGAGTTTGCTGGGAGTTTTGTGAGCTTGCCACATAACCATAAGCATAGGAAGAAGGGGAAAACTAATTTGAAGTTGGGATTGACGGAATTGTTGACGGAGTTGGGGGCTGATGGGGATGAAAGCGTGGTGGTGACTTTGGTGCCAAAGAACGGGAGTGATGATGTTAGTGTTTCTGGTATCAAGATTGAGTTTGCTTCTTAA

Network for GWHGAAZE002549

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00264.21	Tyrosinase	167	363	5.10E-21
PF12142.9	PPO1_DWL	363	398	1.60E-10
PF12143.9	PPO1_KFDV	419	547	3.10E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00422	E1.10.3.1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Tyrosine metabolism	map00350
		Isoquinoline alkaloid biosynthesis	map00950

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0046148	biological_process	pigment biosynthetic process
GO:0016491	molecular_function	oxidoreductase activity
GO:0004097	molecular_function	catechol oxidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.008
	SRR3591706	second leaf	0.110
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.361
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.019
	SRR3591712	Green floral bud	0.042
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.065
	SRR8316896	Juvenile bud stage	0.265
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.077
	SRR8316900	Third green stage	0.053
	SRR8316901	Third green stage	0.112
	SRR8316898	Complete white stage	0.009
	SRR8316899	Complete white stage	0.132
	SRR8316903	Complete white stage	0.052
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.078
	SRR6706287	Light intensity 50%	0.106
	SRR6706288	Light intensity 20%	0.261
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.031
	CNS0095593	Slightly white alabastrum(diploid) 2	0.130
	CNS0095594	Slightly white alabastrum(diploid) 3	0.011
	CNS0095595	Whole white alabastrum(diploid) 2	0.045
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.088
	CNS0095598	Silvery flower (diploied) 1	0.118
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.001
	CNS0095601	Golden flower (diploid) 1	0.004
	CNS0095602	Golden flower (diploid) 2	0.019
	CNS0095603	Golden flower (diploid) 3	0.003
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.009
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.089
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.096
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.031
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.004
	CNS0095612	Silvery flower (diploied) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.004
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.072
	CRR073298	Stem 2	0.144
	CRR073299	Stem 3	0.140
	CRR073300	Leaf 1	0.134
	CRR073301	Leaf 2	0.367
	CRR073302	Leaf 3	0.268
	CRR073303	Juvenile bud 1	0.669
	CRR073304	Juvenile bud 2	0.752
	CRR073305	Juvenile bud 3	0.525
	CRR073306	Third green 1	0.172
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.036
	CRR073309	Second white 1	0.001
	CRR073310	Second white 2	0.002
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.005
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.016
	CRR073318	Tawny withering 1	0.076
	CRR073319	Tawny withering 2	0.558
	CRR073320	Tawny withering 3	0.021