Gene detail

Detail information of GWHGAAZE002610

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP06028.1	0	unnamed protein product [Coffea canephora]
COG	YP_006860808.1	1E-99	preprotein translocase subunit SecY
Swissprot	tr\|P38379\|SC61A_PYRSA	0	Protein transport protein Sec61 subunit alpha
trEMBL	tr\|A0A068UEG9\|A0A068UEG9_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_19 {ECO:0000313\|EMBL:CDP06028.1}
TAIR10	AT2G34250.2	0	SecY protein transport family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	82652306	82657271	-
GWHAAZE00000001	mRNA	82652306	82657271	-
GWHAAZE00000001	exon	82652306	82652545	-
GWHAAZE00000001	exon	82652674	82652809	-
GWHAAZE00000001	exon	82653072	82653196	-
GWHAAZE00000001	exon	82653274	82653628	-
GWHAAZE00000001	exon	82654013	82654240	-
GWHAAZE00000001	exon	82656928	82657271	-
GWHAAZE00000001	CDS	82656928	82657271	-
GWHAAZE00000001	CDS	82654013	82654240	-
GWHAAZE00000001	CDS	82653274	82653628	-
GWHAAZE00000001	CDS	82653072	82653196	-
GWHAAZE00000001	CDS	82652674	82652809	-
GWHAAZE00000001	CDS	82652306	82652545	-

Transcript Sequence
>GWHTAAZE002614 ATGGGTGGTGGATTTAGAGTGCTTCATCTAGTTCGACCATTTTTATCATTTCTTCCTGAAGTTCAGAGTGCTGACAGGAAAGTTCCATTTAGAGAAAAGGTTATATACACTGTGATTTCTCTTTTCATTTTCCTGGTATGCAGTCAGCTCCCTTTGTATGGGATACACTCTACAACCGGTGCGGATCCTTTCTATTGGATGCGTGTTATTCTTGCCTCGAATCGTGGAACTGTCATGGAGCTCGGTATCACCCCTATTGTGACTTCAGGGTTGGTGATGCAACTATTAGCTGGTTCCAAGATCATTGAAGTGGATAATAATGTACGTGAGGATCGCGCTCTATTAAATGGTGCACAGAAGTTGTTGGGCATCCTGATAGCTGTTGGCGAGGCAGTGGCTTATGTTCTCTCAGGGATGTATGGTAGTGTTAGCCAACTAGGAGTTGGAAATGCAATTCTTATAATCATTCAACTGTGCTTTGCTGGTATCATAGTAATATGCCTGGACGAACTTCTCCAGAAAGGATATGGTTTAGGCTCAGGAATTTCTCTATTCATAGCAACCAACATCTGTGAAAATATCATCTGGAAAGCGTTTAGTCCTACCACAATTAACAGTGGGCGTGGAGCTGAATTTGAAGGCGCCGTGATTGCTTTGTTCCATCTGCTAATAACTAGAACGGACAAGGTCCGTGCACTCCGTGAAGCGTTCTACAGGCAAAACCTTCCTAATGTGACAAACTTGCTCGCAACAGTCTTGATCTTTCTTATTGTTATCTACTTTCAAGGGTTCCGTGTGGTTTTGCCTGTGAGGTCAAAGAATGCCCGAGGTCAACAGGGTTCATATCCAATTAAGCTGTTCTACACCTCCAATATGCCGATTATTCTACAGTCTGCACTTGTGTCAAACCTCTACTTCATTTCACAGTTGTTGTACAGAAAATACAGTGGAAATTTCCTTGTGAACCTCTTGGGAAAGTGGAAGGAGTCTGAATATTCTGGTCAATCTATTCCTGTTGGCGGTCTTGCGTATTATATAACAGCACCATCAAGCTTGGCGGATGTGGCAGCTAATCCTTTCCATGCACTATTTTACATCGTGTTTATGCTCTCAGCATGTGCTCTATTCTCAAAAACTTGGATCGAAGTATCAGGTTCTTCAGCTAGGGATGTGGCTAAACAGCTCAAGGAACAACAAATGGTGATGCCTGGCCATAGAGAATCAAATCTACAGAAGGAACTAAACCGGTACATTCCAACAGCAGCAGCCTTTGGGGGAATGTGTATTGGTGCACTAACAGTGTTGGCAGATTTCATGGGAGCAATTGGTTCGGGCACTGGGATTCTACTGGCGGTCACCATCATATATCAGTACTTTGAGACTTTTGAAAAGGAGAAAGCCAGTGAGCTAGGTTTCTTCGGCTTCTAG

Network for GWHGAAZE002610

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10559.10	Plug_translocon	42	76	6.30E-18
PF00344.21	SecY	77	458	5.00E-75

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10956	SEC61A	Protein export	map03060
		Protein processing in endoplasmic reticulum	map04141
		Phagosome	map04145

Gene Ontology

GO term	Ontology	Name
GO:0015031	biological_process	protein transport
GO:0016020	cellular_component	membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.204
	SRR3591706	second leaf	0.081
	SRR3591707	mature leaf	0.110
	SRR3591708	Shoot apex	0.288
	SRR3591709	Stem	0.133
	SRR3591710	White floral bud	11.884
	SRR3591711	White flower	1.112
	SRR3591712	Green floral bud	19.739
	SRR3591713	Yellow flower	0.248
SRP173429	SRR8316895	Juvenile bud stage	8.860
	SRR8316896	Juvenile bud stage	23.495
	SRR8316897	Juvenile bud stage	7.911
	SRR8316894	Third green stage	6.712
	SRR8316900	Third green stage	22.673
	SRR8316901	Third green stage	22.246
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.036
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.103
	SRR8316904	Silver flowering stage	0.107
	SRR8316905	Silver flowering stage	0.131
	SRR8316906	Gold flowering stage	0.089
	SRR8316907	Gold flowering stage	0.098
	SRR8316908	Gold flowering stage	0.440
SRP132670	SRR6706286	Control	7.082
	SRR6706287	Light intensity 50%	6.606
	SRR6706288	Light intensity 20%	5.785
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	28.213
	CNS0095593	Slightly white alabastrum(diploid) 2	19.343
	CNS0095594	Slightly white alabastrum(diploid) 3	36.571
	CNS0095595	Whole white alabastrum(diploid) 2	32.659
	CNS0095596	Whole white alabastrum(diploid) 3	43.157
	CNS0095597	Whole white alabastrum(diploid) 4	30.646
	CNS0095598	Silvery flower (diploied) 1	0.391
	CNS0095599	Silvery flower (diploied) 2	0.820
	CNS0095600	Silvery flower (diploied) 3	0.636
	CNS0095601	Golden flower (diploid) 1	0.632
	CNS0095602	Golden flower (diploid) 2	0.190
	CNS0095603	Golden flower (diploid) 3	0.453
	CNS0095604	Slightly white alabastrum(tetraploid) 1	36.539
	CNS0095605	Slightly white alabastrum(tetraploid) 2	39.315
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.332
	CNS0095607	Whole white alabastrum(tetraploid) 1	47.731
	CNS0095608	Whole white alabastrum(tetraploid) 2	52.347
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.447
	CNS0095610	Silvery flower (diploied) 1	0.208
	CNS0095611	Silvery flower (diploied) 2	1.341
	CNS0095612	Silvery flower (diploied) 3	2.759
	CNS0095613	Golden flower (tetraploid) 1	0.472
	CNS0095614	Golden flower (tetraploid) 2	0.227
	CNS0095615	Golden flower (tetraploid) 3	0.922
CRA001975	CRR073297	Stem 1	9.168
	CRR073298	Stem 2	7.859
	CRR073299	Stem 3	7.279
	CRR073300	Leaf 1	13.160
	CRR073301	Leaf 2	10.074
	CRR073302	Leaf 3	9.831
	CRR073303	Juvenile bud 1	12.281
	CRR073304	Juvenile bud 2	11.485
	CRR073305	Juvenile bud 3	0.327
	CRR073306	Third green 1	2.007
	CRR073307	Third green 2	4.065
	CRR073308	Third green 3	2.507
	CRR073309	Second white 1	0.823
	CRR073310	Second white 2	0.309
	CRR073311	Second white 3	0.664
	CRR073312	Silver flowering 1	3.787
	CRR073313	Silver flowering 2	4.039
	CRR073314	Silver flowering 3	2.658
	CRR073315	Gold flowering 1	3.183
	CRR073316	Gold flowering 2	0.310
	CRR073317	Gold flowering 3	3.802
	CRR073318	Tawny withering 1	2.478
	CRR073319	Tawny withering 2	3.725
	CRR073320	Tawny withering 3	2.438