Gene detail

Detail information of GWHGAAZE002645

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009760198.1	0	PREDICTED: tRNA dimethylallyltransferase 9 [Nicotiana sylvestris]
COG	YP_004672082.1	2E-60	tRNA dimethylallyltransferase
Swissprot	tr\|Q9C5J6\|IPT9_ARATH	2E-168	tRNA dimethylallyltransferase 9
trEMBL	tr\|V4UR67\|V4UR67_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR64976.1}
TAIR10	AT5G20040.2	5E-131	isopentenyltransferase 9

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	83348721	83355245	+
GWHAAZE00000001	mRNA	83348721	83355245	+
GWHAAZE00000001	exon	83348721	83349029	+
GWHAAZE00000001	exon	83349626	83349679	+
GWHAAZE00000001	exon	83350268	83350345	+
GWHAAZE00000001	exon	83351164	83351206	+
GWHAAZE00000001	exon	83351538	83351646	+
GWHAAZE00000001	exon	83351937	83352135	+
GWHAAZE00000001	exon	83352565	83352790	+
GWHAAZE00000001	exon	83354148	83354242	+
GWHAAZE00000001	exon	83354637	83354731	+
GWHAAZE00000001	exon	83355061	83355136	+
GWHAAZE00000001	exon	83355228	83355245	+
GWHAAZE00000001	CDS	83348721	83349029	+
GWHAAZE00000001	CDS	83349626	83349679	+
GWHAAZE00000001	CDS	83350268	83350345	+
GWHAAZE00000001	CDS	83351164	83351206	+
GWHAAZE00000001	CDS	83351538	83351646	+
GWHAAZE00000001	CDS	83351937	83352135	+
GWHAAZE00000001	CDS	83352565	83352790	+
GWHAAZE00000001	CDS	83354148	83354242	+
GWHAAZE00000001	CDS	83354637	83354731	+
GWHAAZE00000001	CDS	83355061	83355136	+
GWHAAZE00000001	CDS	83355228	83355245	+

Transcript Sequence
>GWHTAAZE002649 TTGTTCAACTGCAAACCCACTCTTCTTCTCTATTCATCCCCCAAAATGATGAGCACTCTCGGCCGCATTCGCATGTGTTGTCTCAATACTCCATACACGGCGGAAACACCTCTTCTTCGCACCCCCACCGCACTCACCTCCTTCCGCCACCGCCAACGCCGCCCGCGACTCTTCTCCGCTTCCTTCTCCTCCGCTAAAAAAGATAAAGTAATTGTTATCTCCGGTCCCACCGGCGCCGGCAAAAGCAGGCTTGCATTAGAGCTCGCCAAGAGACTCAACGGTGAAATTATTAGCGCCGATTCTGTCCAGGTGTATCGTGGCCTTGACATTGGATCAGCAAAGCCTTCAATTAGTGAAAGAGAGATTGTCCTAGATAAAGGTGGTTTTCCTGAAGCTTCATTAACCGGTCCCTTTGTCCCATATCAGGGCGTAGGAAAAGCAGAGGTGCCTCACCATTTAGTTGACATATTGCATCCTTCTGAAGATTATTCTGTTGGCCAGTTTTTTGAGGATGCAAGGCAAACTACAAGAGAAATACTGAATAATGGTCGTGTTCCAATAGTTACTGGCGGGACTGGATTATACTTACGATGGTTCATATATGGGAAGCCAGATGTTCCAAAAGCCTCTCCTGAGATTGCCTCTGAAGTTCAATCAGAGCTTGCAGATTTACAGAGAGATTGGGACTGGGATGCTGCTGTACAGTTGGTTGTTAAAGCAGGTGATCCAAGTGCCGAATCTTTAGCTGCCAATGATTGGTATCGCTTACGCCGGAGGCTTGAAATCATCCGGTCTAGTGGATCACCTCCATCAGCTTTCCAAGTACCGTATAATTCTTTCAGGCAACCCGTTGATTCACGTGTGACAGACTGCTCTCTTGAAATCAACTCTTCTCCTGATGACATTCAGGAAAGCAAGCCTAAGGATTTGGAATATGATTACTATTGTTTTTTCTTGTCCAGCAACAGACTTGAACTCTACAGATCAATTGATTTCAGGTGTGAAGATATGCTTTCAGGAAGTGCTGGAATTTTGTCTGAGGCAAAATGGCTTCTTGATATGGGTCTTGAGCCAAATTCCAATTCTGCAACTCGAGCAATTGGTTACAGACAAGCTATGGAATATCTACTAAAGTGTAAAGAACAAGGGGGCGGGAGTTCTACACGAGACTTCTATTATTTTTTATCAAACTTTCAGAAAGCATCTAGGAACTTTGCGAAAAGGCAAATGACATGGTTTCGTAATGAGCAAATTTATCACTGGCTTGATGCTTCCAAACCCTTGGTATTAAATTGCACATGA

Network for GWHGAAZE002645

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01715.18	IPPT	103	417	4.70E-60

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00791	miaA, TRIT1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Zeatin biosynthesis	map00908

Gene Ontology

GO term	Ontology	Name
GO:0008033	biological_process	tRNA processing

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.725
	SRR3591706	second leaf	10.680
	SRR3591707	mature leaf	9.045
	SRR3591708	Shoot apex	9.052
	SRR3591709	Stem	3.236
	SRR3591710	White floral bud	3.164
	SRR3591711	White flower	3.958
	SRR3591712	Green floral bud	5.654
	SRR3591713	Yellow flower	5.201
SRP173429	SRR8316895	Juvenile bud stage	5.696
	SRR8316896	Juvenile bud stage	7.628
	SRR8316897	Juvenile bud stage	3.673
	SRR8316894	Third green stage	3.232
	SRR8316900	Third green stage	8.024
	SRR8316901	Third green stage	8.347
	SRR8316898	Complete white stage	1.701
	SRR8316899	Complete white stage	8.214
	SRR8316903	Complete white stage	2.706
	SRR8316902	Silver flowering stage	0.701
	SRR8316904	Silver flowering stage	1.238
	SRR8316905	Silver flowering stage	0.459
	SRR8316906	Gold flowering stage	2.366
	SRR8316907	Gold flowering stage	2.010
	SRR8316908	Gold flowering stage	2.798
SRP132670	SRR6706286	Control	5.617
	SRR6706287	Light intensity 50%	5.606
	SRR6706288	Light intensity 20%	7.526
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.225
	CNS0095593	Slightly white alabastrum(diploid) 2	3.723
	CNS0095594	Slightly white alabastrum(diploid) 3	3.257
	CNS0095595	Whole white alabastrum(diploid) 2	4.370
	CNS0095596	Whole white alabastrum(diploid) 3	2.770
	CNS0095597	Whole white alabastrum(diploid) 4	3.132
	CNS0095598	Silvery flower (diploied) 1	3.497
	CNS0095599	Silvery flower (diploied) 2	3.952
	CNS0095600	Silvery flower (diploied) 3	3.237
	CNS0095601	Golden flower (diploid) 1	3.804
	CNS0095602	Golden flower (diploid) 2	3.934
	CNS0095603	Golden flower (diploid) 3	4.671
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.448
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.461
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.556
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.300
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.124
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.412
	CNS0095610	Silvery flower (diploied) 1	2.747
	CNS0095611	Silvery flower (diploied) 2	4.154
	CNS0095612	Silvery flower (diploied) 3	3.002
	CNS0095613	Golden flower (tetraploid) 1	1.534
	CNS0095614	Golden flower (tetraploid) 2	2.636
	CNS0095615	Golden flower (tetraploid) 3	1.210
CRA001975	CRR073297	Stem 1	8.607
	CRR073298	Stem 2	6.411
	CRR073299	Stem 3	7.153
	CRR073300	Leaf 1	6.588
	CRR073301	Leaf 2	7.937
	CRR073302	Leaf 3	7.787
	CRR073303	Juvenile bud 1	5.935
	CRR073304	Juvenile bud 2	4.148
	CRR073305	Juvenile bud 3	4.981
	CRR073306	Third green 1	0.612
	CRR073307	Third green 2	0.662
	CRR073308	Third green 3	0.548
	CRR073309	Second white 1	0.985
	CRR073310	Second white 2	0.639
	CRR073311	Second white 3	1.226
	CRR073312	Silver flowering 1	1.152
	CRR073313	Silver flowering 2	1.242
	CRR073314	Silver flowering 3	1.068
	CRR073315	Gold flowering 1	7.954
	CRR073316	Gold flowering 2	8.229
	CRR073317	Gold flowering 3	5.676
	CRR073318	Tawny withering 1	2.489
	CRR073319	Tawny withering 2	2.082
	CRR073320	Tawny withering 3	2.387