Gene detail

Detail information of GWHGAAZE002698

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009626761.1	0	PREDICTED: non-canonical poly(A) RNA polymerase PAPD5 [Nicotiana tomentosiformis]
trEMBL	tr\|K4CXM9\|K4CXM9_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc10g006990.2.1}
TAIR10	AT5G53770.1	3E-153	Nucleotidyltransferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	84456691	84464854	+
GWHAAZE00000001	mRNA	84456691	84464854	+
GWHAAZE00000001	exon	84456691	84457045	+
GWHAAZE00000001	exon	84458301	84458413	+
GWHAAZE00000001	exon	84458761	84458817	+
GWHAAZE00000001	exon	84460204	84460299	+
GWHAAZE00000001	exon	84460381	84460451	+
GWHAAZE00000001	exon	84461364	84461406	+
GWHAAZE00000001	exon	84461535	84461615	+
GWHAAZE00000001	exon	84461700	84461759	+
GWHAAZE00000001	exon	84462524	84462574	+
GWHAAZE00000001	exon	84463121	84463218	+
GWHAAZE00000001	exon	84463327	84463375	+
GWHAAZE00000001	exon	84463466	84463510	+
GWHAAZE00000001	exon	84464339	84464854	+
GWHAAZE00000001	CDS	84456691	84457045	+
GWHAAZE00000001	CDS	84458301	84458413	+
GWHAAZE00000001	CDS	84458761	84458817	+
GWHAAZE00000001	CDS	84460204	84460299	+
GWHAAZE00000001	CDS	84460381	84460451	+
GWHAAZE00000001	CDS	84461364	84461406	+
GWHAAZE00000001	CDS	84461535	84461615	+
GWHAAZE00000001	CDS	84461700	84461759	+
GWHAAZE00000001	CDS	84462524	84462574	+
GWHAAZE00000001	CDS	84463121	84463218	+
GWHAAZE00000001	CDS	84463327	84463375	+
GWHAAZE00000001	CDS	84463466	84463510	+
GWHAAZE00000001	CDS	84464339	84464854	+

Transcript Sequence
>GWHTAAZE002702 ATGGATACCACCGAGGCCTTTTTGTACGAAACCCTAAGCCCACTCTCCGCTTCTGCTGCCACCACCACCACCGATCAAGCCCCGCCGCCCTCCTCCTCCGACTCGGAACCCTACGTTGTGTTCCGCAACCAAATCTCTCTTTCCTCAGTTCACCTTCCCTTGCCGGTAACCGCCGCCACCGACTACTTCTCTCTCGACGTCCGAGCCGATGAAGATGAACCGAATGTTGATCTGATTTCAACTCCGTTGCCGGCGGAAACTCCGGTTCGGACTCGAGTGCCTGAGCGCACGCTCGAGGGCGGTTGGTTTCGTGCCAATTGTCGGTTTAAGAGCCCCATGCTTCAGCTTCACAAAGAGATACTGGATTTCTGTGACTTTCTTTCTCCAACTCAGGAGGAGCAAGTGTCACGCAATACAGCTGTAGAATCTGTCTTTGATGTAATAAAGTACATTTGGCCCAACTGCCAGGTTGAAGTTTTTGGATCATTCAAGACAGGACTTTATCTTCCAAGTAGTGATATCGATGTCGTGATTCTGGGTTCAGATATCAGAACACCTCAACTTGGTTTACATGCTCTTTCAAGGGCCCTATCACAAAGAGGCATTGCAAAGAAAATACAGGTGATTGCCAAGGCTCGTGTGCCAATCATTAAATTTGTGGAGAAGAGAAGTGGTGTTTCTTTTGATATAAGTTTTGATGTGACAAATGGACCAAAAGCTGCTGAATTTATTCAGGATGCTATATCCAAGTGGCCCCCATTAAGGCCATTGTGCTTAATCTTGAAAGTTTTTCTACAACAGAGAGAGTTGAATGAGGTATATTCCGGTGGGATTGGGTCCTATGCGCTCCTTGCCATGCTTATAGCAATGCTGCGGAATCTCCGGGATGGCCAAGGTTCGTCAGAACATAATCTGGGCGTTCTTTTGGTTAACTTTTTCGATATTTATGGACGTAAATTAAACACACCTGATGTTGGTGTATCTTGCAATGGGGCAGGCACCTTCTTCTTCAAGAAAACTAAGGGGTTTATGATGAAAGGACGGCCAATGCTTCTCTCCATCGAGGATCCACAGGCTCCAGAGAATGATATTGGAAAGAGCTCCTTCAATTATTTCCAGGTAAGATCGGCTTTTTCAATGGCTTTCTCAACATTGACAAATTCAAAGACCATCACGACCTTAGGCCCCGCCAGGAGCATCCTTGGTACCATTATAAGACCGGACGCAGTACTAGTGGAACGAAAAGGTGGTTCGAACGGGGAGGTGACATTTAATAATTTGCTCCCAGGAGCAGGAGAGCCATTACAGCAAGAATACAGCGATCAACAAGGCTTGTATTGCAATTGGCGGTTAGATGAGGATGAGGAAGAGCCGCTTCCCCGTGGGAACGGCGTTGTAGAGGATGGTGGTAGTGCCGAGTCATCTGGGAAGAAGAGGAAGAAGTCATCTAAGGGGAAGAAGGTGTTGAAGAAGCTAAAAGAAAGTGGGGATGACAGGACGGGCAAGAGTGAGAAAGGATCAAAGAAAGAAAAGGGTACGAAGAAAAACAGGTGGAGACATTACCGGAATGGTGGTGACAGCAACGGTTTTGGTCGGTATGGTGGTGGCGGAATGACATGGAGTCTCTCAGGTTAG

Network for GWHGAAZE002698

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01909.24	NTP_transf_2	148	235	4.30E-10
PF03828.20	PAP_assoc	304	362	2.20E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03514	PAPD5_7, TRF4	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0016779	molecular_function	nucleotidyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.046
	SRR3591706	second leaf	14.196
	SRR3591707	mature leaf	13.771
	SRR3591708	Shoot apex	24.315
	SRR3591709	Stem	20.435
	SRR3591710	White floral bud	16.133
	SRR3591711	White flower	20.734
	SRR3591712	Green floral bud	20.334
	SRR3591713	Yellow flower	13.391
SRP173429	SRR8316895	Juvenile bud stage	18.405
	SRR8316896	Juvenile bud stage	24.745
	SRR8316897	Juvenile bud stage	12.024
	SRR8316894	Third green stage	10.838
	SRR8316900	Third green stage	26.335
	SRR8316901	Third green stage	26.209
	SRR8316898	Complete white stage	8.628
	SRR8316899	Complete white stage	27.249
	SRR8316903	Complete white stage	14.652
	SRR8316902	Silver flowering stage	12.129
	SRR8316904	Silver flowering stage	15.942
	SRR8316905	Silver flowering stage	7.584
	SRR8316906	Gold flowering stage	22.685
	SRR8316907	Gold flowering stage	23.321
	SRR8316908	Gold flowering stage	22.350
SRP132670	SRR6706286	Control	33.734
	SRR6706287	Light intensity 50%	32.426
	SRR6706288	Light intensity 20%	35.231
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.443
	CNS0095593	Slightly white alabastrum(diploid) 2	17.381
	CNS0095594	Slightly white alabastrum(diploid) 3	15.208
	CNS0095595	Whole white alabastrum(diploid) 2	14.568
	CNS0095596	Whole white alabastrum(diploid) 3	15.102
	CNS0095597	Whole white alabastrum(diploid) 4	15.287
	CNS0095598	Silvery flower (diploied) 1	20.899
	CNS0095599	Silvery flower (diploied) 2	17.069
	CNS0095600	Silvery flower (diploied) 3	20.478
	CNS0095601	Golden flower (diploid) 1	18.116
	CNS0095602	Golden flower (diploid) 2	17.138
	CNS0095603	Golden flower (diploid) 3	16.163
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.054
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.250
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.454
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.963
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.902
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.331
	CNS0095610	Silvery flower (diploied) 1	20.912
	CNS0095611	Silvery flower (diploied) 2	20.493
	CNS0095612	Silvery flower (diploied) 3	16.236
	CNS0095613	Golden flower (tetraploid) 1	11.078
	CNS0095614	Golden flower (tetraploid) 2	17.557
	CNS0095615	Golden flower (tetraploid) 3	13.232
CRA001975	CRR073297	Stem 1	22.669
	CRR073298	Stem 2	22.492
	CRR073299	Stem 3	17.075
	CRR073300	Leaf 1	23.142
	CRR073301	Leaf 2	20.408
	CRR073302	Leaf 3	13.772
	CRR073303	Juvenile bud 1	12.953
	CRR073304	Juvenile bud 2	9.817
	CRR073305	Juvenile bud 3	20.965
	CRR073306	Third green 1	6.337
	CRR073307	Third green 2	5.100
	CRR073308	Third green 3	6.872
	CRR073309	Second white 1	7.607
	CRR073310	Second white 2	7.390
	CRR073311	Second white 3	8.180
	CRR073312	Silver flowering 1	7.633
	CRR073313	Silver flowering 2	13.299
	CRR073314	Silver flowering 3	9.616
	CRR073315	Gold flowering 1	5.561
	CRR073316	Gold flowering 2	10.154
	CRR073317	Gold flowering 3	6.607
	CRR073318	Tawny withering 1	14.839
	CRR073319	Tawny withering 2	10.881
	CRR073320	Tawny withering 3	16.086