Gene detail

Detail information of GWHGAAZE002716

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004251852.1	0	PREDICTED: protochlorophyllide reductase-like [Solanum lycopersicum]
COG	YP_007155133.1	2E-139	light-dependent protochlorophyllide reductase
Swissprot	tr\|Q9SDT1\|POR_DAUCA	0	Protochlorophyllide reductase, chloroplastic (Precursor)
trEMBL	tr\|K4DCQ6\|K4DCQ6_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc12g013710.1.1}
TAIR10	AT5G54190.1	4E-151	protochlorophyllide oxidoreductase A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	84825126	84827382	-
GWHAAZE00000001	mRNA	84825126	84827382	-
GWHAAZE00000001	exon	84827329	84827382	-
GWHAAZE00000001	exon	84827123	84827221	-
GWHAAZE00000001	exon	84826239	84826767	-
GWHAAZE00000001	exon	84825817	84826139	-
GWHAAZE00000001	exon	84825126	84825281	-
GWHAAZE00000001	CDS	84827329	84827382	-
GWHAAZE00000001	CDS	84827123	84827221	-
GWHAAZE00000001	CDS	84826239	84826767	-
GWHAAZE00000001	CDS	84825817	84826139	-
GWHAAZE00000001	CDS	84825126	84825281	-

Transcript Sequence
>GWHTAAZE002720 ATGGCTCTACAGTCTGCTTCTCTGCTTCCCTCTGCTTTCTCCATGCACAAAGAGGGTAAGAGCAATACATCTTTGAAGGATTCTAGTCTGTTTGGAGTTTCACTGTCAGATCATCCTAAAGCAGACTTCAGCTTTTCAGCATTAAGGACCAAGGGCCAAAGAAAATTTCCCATTGGAGCCGCAAACATCCAGGCGGTAGTTACAGCTCCGGCAATAAACCAAGCTTCACCGGCCGGGAAGAAAACCCTAAGAAAGGGAAGTGTCATAGTCACTGGAGCTTCCTCAGGGCTGGGTCTGGCAGCAGCCAAGGCTCTAGCCGAGACAGGCAAATGGCACGTAATTATGGCCTGCAGGGACTTTCTCAAGGCCGAGAGAGCGGCCAAGGCAGTGGGTATGCCAAAGGAGAATTACACCATTATGCACTTGGACCTAGCCTCACTCGACAGTGTCCGACAGTTTGTCGATAACTTCCGGCGATCGGGCCGGCCACTCGATGTGTTGGTTAATAATGCAGCAGTGTACTTACCCACTGCTAAGGAGCCTACTTTCACTGCTGATGGATTTGAATTGAGTGTTGGGACTAACCATTTGGGGCACTTTTTGCTTTCAAATTTGCTTTTGGAAGATTTGAAGCAGTCTGATTACCCGTCGAAGCGACTTATTATTGTTGGTTCAGTCACAGGGAACACAAACACATTGGCTGGGAATGTACCACCAAAAGCAAGCCTAGGGGACATGAGGGGCTTAGCAGGGGGATTGAATGGGCTAAACAGCTCAGCTATGATTGATGGTGGAAAGTTTGATGGTGCAAAGGCATACAAGGACAGCAAGGTCTGCAACATGCTCACCATGCAAGAGTTCCACCACCGCTACCATGAGGACACCGGCATCACCTTCGCTTCCCTCTACCCTGGCTGCATTGCCACCACTGGCCTGTTCCGAGAGCACATCCCCTTGTTCCGAGCCCTCTTCCCTCCATTCCAAAAGTATGTCACCAAGGGCTTCGTTGTGAGTGATCCAAGCTTGACAAAGTCTGGAGTATACTGGAGCTGGAACAAGGACTCGGCTTCATTCGAGAATCAGTTGTCCAAAGAAGCCAGCAATGTGGAGAAGGCACGTAAGGTGTGGGAAGTGAGCGAGAAACTTGTTGGTCTTGCTTAA

Network for GWHGAAZE002716

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00106.26	adh_short	88	231	1.40E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00218	por	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016630	molecular_function	protochlorophyllide reductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	85.833
	SRR3591706	second leaf	48.988
	SRR3591707	mature leaf	7.412
	SRR3591708	Shoot apex	75.311
	SRR3591709	Stem	65.138
	SRR3591710	White floral bud	3.137
	SRR3591711	White flower	8.188
	SRR3591712	Green floral bud	0.790
	SRR3591713	Yellow flower	0.305
SRP173429	SRR8316895	Juvenile bud stage	2.106
	SRR8316896	Juvenile bud stage	1.155
	SRR8316897	Juvenile bud stage	0.699
	SRR8316894	Third green stage	0.615
	SRR8316900	Third green stage	0.779
	SRR8316901	Third green stage	0.183
	SRR8316898	Complete white stage	0.030
	SRR8316899	Complete white stage	1.439
	SRR8316903	Complete white stage	1.643
	SRR8316902	Silver flowering stage	0.046
	SRR8316904	Silver flowering stage	0.059
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.208
SRP132670	SRR6706286	Control	0.943
	SRR6706287	Light intensity 50%	0.888
	SRR6706288	Light intensity 20%	0.483
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.500
	CNS0095593	Slightly white alabastrum(diploid) 2	2.730
	CNS0095594	Slightly white alabastrum(diploid) 3	1.837
	CNS0095595	Whole white alabastrum(diploid) 2	2.187
	CNS0095596	Whole white alabastrum(diploid) 3	0.561
	CNS0095597	Whole white alabastrum(diploid) 4	0.780
	CNS0095598	Silvery flower (diploied) 1	65.783
	CNS0095599	Silvery flower (diploied) 2	71.415
	CNS0095600	Silvery flower (diploied) 3	10.293
	CNS0095601	Golden flower (diploid) 1	66.152
	CNS0095602	Golden flower (diploid) 2	30.922
	CNS0095603	Golden flower (diploid) 3	29.450
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.443
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.961
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.863
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.802
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.342
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.300
	CNS0095610	Silvery flower (diploied) 1	0.373
	CNS0095611	Silvery flower (diploied) 2	3.437
	CNS0095612	Silvery flower (diploied) 3	0.995
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.602
	CNS0095615	Golden flower (tetraploid) 3	0.416
CRA001975	CRR073297	Stem 1	3.075
	CRR073298	Stem 2	1.805
	CRR073299	Stem 3	5.116
	CRR073300	Leaf 1	0.644
	CRR073301	Leaf 2	0.065
	CRR073302	Leaf 3	0.292
	CRR073303	Juvenile bud 1	0.257
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.098
	CRR073306	Third green 1	0.182
	CRR073307	Third green 2	0.068
	CRR073308	Third green 3	0.078
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.215
	CRR073316	Gold flowering 2	0.816
	CRR073317	Gold flowering 3	1.071
	CRR073318	Tawny withering 1	9.555
	CRR073319	Tawny withering 2	4.529
	CRR073320	Tawny withering 3	6.890