Detail information of GWHGAAZE002729


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002281902.20PREDICTED: PAP-specific phosphatase HAL2-like [Vitis vinifera]
COGYP_007205281.11E-633'(2'),5'-bisphosphate nucleotidase, HAL2 family
Swissprottr|Q38945|DPNPH_ARATH0PAP-specific phosphatase HAL2-like
trEMBLtr|F6H282|F6H282_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB46378.1}
TAIR10AT5G54390.12E-146HAL2-like

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8510276385107695-
GWHAAZE00000001mRNA8510276385107695-
GWHAAZE00000001exon8510754885107695-
GWHAAZE00000001exon8510424685104933-
GWHAAZE00000001exon8510276385103066-
GWHAAZE00000001CDS8510754885107695-
GWHAAZE00000001CDS8510424685104933-
GWHAAZE00000001CDS8510276385103066-
Transcript Sequence

Network for GWHGAAZE002729

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0051GO:0006790 sulfur compound metabolic process GOslim:biological_process
GO:0008441 3'(2'),5'-bisphosphate nucleotidase activity GOslim:molecular_function
GO:0046854 phosphatidylinositol phosphorylation GOslim:biological_process
Transcription factor AUX/IAA family Transcription factor AUX/IAA
Transcription factor bHLH family Transcription factor bHLH
GO:0046983 protein dimerization activity GOslim:molecular_function
map00920 Sulfur metabolism


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00459.26Inositol_P423749.10E-53
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01082cysQ, MET22, BPNT1 Metabolic pathways map01100
Microbial metabolism in diverse environmentsmap01120
Sulfur metabolismmap00920

Gene Ontology

GO term OntologyName
GO:0006790biological_processsulfur compound metabolic process
GO:0046854biological_processphosphatidylinositol phosphorylation
GO:0008441molecular_function3'(2'),5'-bisphosphate nucleotidase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.947
SRR3591706second leaf2.888
SRR3591707mature leaf1.410
SRR3591708Shoot apex8.174
SRR3591709Stem3.866
SRR3591710White floral bud73.213
SRR3591711White flower14.991
SRR3591712Green floral bud68.264
SRR3591713Yellow flower4.842
SRP173429 SRR8316895Juvenile bud stage 11.210
SRR8316896Juvenile bud stage 19.436
SRR8316897Juvenile bud stage 6.805
SRR8316894Third green stage 10.806
SRR8316900Third green stage 46.828
SRR8316901Third green stage 46.877
SRR8316898Complete white stage 41.655
SRR8316899Complete white stage 82.699
SRR8316903Complete white stage 54.827
SRR8316902Silver flowering stage9.351
SRR8316904Silver flowering stage16.337
SRR8316905Silver flowering stage8.816
SRR8316906Gold flowering stage 15.031
SRR8316907Gold flowering stage 12.049
SRR8316908Gold flowering stage 8.836
SRP132670SRR6706286Control50.503
SRR6706287Light intensity 50%53.959
SRR6706288Light intensity 20%62.219
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.154
CNS0095593Slightly white alabastrum(diploid) 228.916
CNS0095594Slightly white alabastrum(diploid) 324.455
CNS0095595Whole white alabastrum(diploid) 230.703
CNS0095596Whole white alabastrum(diploid) 339.315
CNS0095597Whole white alabastrum(diploid) 434.456
CNS0095598Silvery flower (diploied) 15.823
CNS0095599Silvery flower (diploied) 28.408
CNS0095600Silvery flower (diploied) 315.479
CNS0095601Golden flower (diploid) 14.595
CNS0095602Golden flower (diploid) 26.395
CNS0095603Golden flower (diploid) 35.194
CNS0095604Slightly white alabastrum(tetraploid) 130.785
CNS0095605Slightly white alabastrum(tetraploid) 222.068
CNS0095606Slightly white alabastrum(tetraploid) 334.077
CNS0095607Whole white alabastrum(tetraploid) 126.056
CNS0095608Whole white alabastrum(tetraploid) 227.282
CNS0095609Whole white alabastrum(tetraploid) 344.433
CNS0095610Silvery flower (diploied) 113.412
CNS0095611Silvery flower (diploied) 215.227
CNS0095612Silvery flower (diploied) 360.278
CNS0095613Golden flower (tetraploid) 15.840
CNS0095614Golden flower (tetraploid) 26.377
CNS0095615Golden flower (tetraploid) 38.697
CRA001975CRR073297Stem 137.108
CRR073298Stem 243.089
CRR073299Stem 341.274
CRR073300Leaf 183.261
CRR073301Leaf 263.011
CRR073302Leaf 380.083
CRR073303Juvenile bud 161.966
CRR073304Juvenile bud 294.917
CRR073305Juvenile bud 368.298
CRR073306Third green 130.984
CRR073307Third green 228.434
CRR073308Third green 330.640
CRR073309Second white 112.510
CRR073310Second white 212.193
CRR073311Second white 38.956
CRR073312Silver flowering 14.330
CRR073313Silver flowering 24.476
CRR073314Silver flowering 34.729
CRR073315Gold flowering 13.018
CRR073316Gold flowering 24.067
CRR073317Gold flowering 35.020
CRR073318Tawny withering 111.634
CRR073319Tawny withering 213.137
CRR073320Tawny withering 38.269