Gene detail

Detail information of GWHGAAZE002732

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002281860.3	0	PREDICTED: lysine-specific histone demethylase 1 homolog 2 [Vitis vinifera]
COG	YP_007160901.1	4E-68	Polyamine oxidase
Swissprot	tr\|Q9LID0\|LDL2_ARATH	0	Lysine-specific histone demethylase 1 homolog 2
trEMBL	tr\|F6H2D7\|F6H2D7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46381.1}
TAIR10	AT3G13682.1	0	LSD1-like2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	85170281	85172652	+
GWHAAZE00000001	mRNA	85170281	85172652	+
GWHAAZE00000001	exon	85170281	85171817	+
GWHAAZE00000001	exon	85171961	85172652	+
GWHAAZE00000001	CDS	85170281	85171817	+
GWHAAZE00000001	CDS	85171961	85172652	+

Transcript Sequence
>GWHTAAZE002736 ATGATGGAGACCCCAGGTTCGAATGCTTTGGTTTCAAAAAGGTCGTTGAGAAGGAAAGTGAGTTCAAGGAACTATGACGAGAATTTAATGGATGAATTCATAGAGAATCATTTGGGTGGTGCTTTGAAGAAAAGGAATAGAACGAAGGAGGCACTTGAGAAAGAAACTGAAACTGAGGCAATGATAGCCTTTTCTCTTGGGTTCCCTATTGATGACTTGCTTGCCGAAGAAATTGAAGCCGGGGTTGTGAAGGAATTAGGTGGAAAGGAGCAAAACGATTATATTGTTGTGAGGAACCATATACTCGCAAAGTGGAGGGGTAACGTGCGGACATGGCTTTCGAAAGCACAGATAAGGGAAACTGTTAGTAGTGAGTACGAACATTTGATATATTCCGCTTATGACTTTCTTTTGTATAATGGATATATAAATTTTGGGGTTTCACCAGCATTCACATCTCAGGTTCCCAAGGAGGAAATGGAAGGGTCAGTGGTTATTATTGGTGCTGGACTTGCTGGTTTAGCCGCAGCGAGACAGCTCCGGTCATTTGGTTTCAAGGTTGTTGTTCTTGAAGGTAGGGATCGACCTGGAGGGAGAGTTTATACTCAGAAAATGGGGCAAAAAGGTAGTTATTCGGCTGTAGATCTTGGTGGCAGTGTTATTACTGGTATCCATGCTAATCCTCTAGGAGTTTTGGCTAGACAACTCTCTATTCCTCTTCACAAGGTCAGAGATAGATGCCCTTTGTACAAGCCCAATGGGGAACCTGTTGCTAAGGAAATTGATTCTCAGGTTGAACTCATCTTTAATAAGCTACTTGACAAAGTCACCCAATTGAGACAAATAATAGGAGGTTTTGCTAATGATATTTCTCTAGGTTCAGTTCTTGAGACTCTTAGGCAATTGTACACTGTGGCTAGAAGTACTGATGAAAGGCAGCTTCTTGATTGGCATTTTGCTAACTTGGAATACGCAAATGCCGGTTGCCTTTCCGATCTTTCTGCTGCGTATTGGGATCAAGACGATCCTTACGAGATGGGTGGGGACCATTGCTTTCTTGCCGGCGGAAACTGGAAACTAATCAATGCATTATGTGAAGGAATTCCCATTTTCTACGGAAAGACAGTTCACACTGTTCGATATGGAAACGAAGGTGTTGAGGTGATTGCTGGGGACCAAGTCTTTCAAGCGGACGTGGTCTTGTGCACCGTTCCACTCGGGGTCCTAAAGAAAAAGACTATCAGATTTGAACCTGAGTTACCTGCAAGGAAGCTTGCGGCAATCAGTAGGCTGGGATTTGGGTTGCTGAATAAGGTTGCGATGGTATTCCCTCGTGTTTTCTGGGGGGAAGATCTGGATACATTTGGTTGTCTCAACAACTATAGCCATAGACGCGGTGAATTCTTTTTGTTTTACAGCTACCATACTGTTTCTGGTGGTTCGGTTCTTGTTGCACTTGTAGCTGGGGAAGCTGCACAATCTTTTGAATATGCAAATCCGTCCAGTTTGCTTCATCACGTTTTAAGCATCCTCAGAGGTATATACAGTCCAAAGGGCATTGATGTCCCAAATCCTATACAATCTATATGTACAAGATGGGGGAGTGATCCCCTTTCTTATGGTTCATACTCTCATGTTAGAGTACAATCATCTGGCAGTGATTACGATATACTTGCAGAAAGTGTGGGTAGTAGTTTATTCTTTGCTGGTGAGGCCACAAACCGGCAATACCCAGCCACCATGCATGGTGCTTACTTGAGTGGTTTAAGAGAAGCTTCACGCATTTTTCGTTCCACTAGGTGTCAGCAAATGAATCCAGGGAAATGCATACAGAAGAATGTTGGGCCAAGCTATGATGCTCTTTCTGATCTGTTCAAGAAGCCCGATCTAGCCTTTGGGGAGTTCTTGTTTATATTCGATACTCCCTCAGGTGGCCCAAATCCGATGGGACTTATGAGGGTTACTTTTGGAGAGTCCTGTAATGATAACTGCAGCCAACATTTGTCAAACCAACCATTGCATCTTTATACAGTGTTATCTCGTGAACAGGCTAATGAATTGGAACTGGTGGCAGGTGGAAATGACAGTAAATTGACTTATTTGTCCAGAAATCTTGGGTTGAAGCTAATGGGAGCTAATGCTTTAGGACCCTTGGGCAATTTCTTGACTGCTAACATTGCTAGTGCACGAAGAGGCAGGGGCAGATTTCGTCTGCCTGCTGCAACATAA

Network for GWHGAAZE002732

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04433.18	SWIRM	77	145	4.20E-11
PF01593.25	Amino_oxidase	171	595	4.60E-89

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SWI/SNF-SWI3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0003677	molecular_function	DNA binding
GO:0005515	molecular_function	protein binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.636
	SRR3591706	second leaf	0.521
	SRR3591707	mature leaf	1.130
	SRR3591708	Shoot apex	2.247
	SRR3591709	Stem	1.190
	SRR3591710	White floral bud	1.576
	SRR3591711	White flower	1.320
	SRR3591712	Green floral bud	0.935
	SRR3591713	Yellow flower	1.718
SRP173429	SRR8316895	Juvenile bud stage	0.604
	SRR8316896	Juvenile bud stage	0.935
	SRR8316897	Juvenile bud stage	0.484
	SRR8316894	Third green stage	0.820
	SRR8316900	Third green stage	1.712
	SRR8316901	Third green stage	1.637
	SRR8316898	Complete white stage	0.324
	SRR8316899	Complete white stage	2.474
	SRR8316903	Complete white stage	0.795
	SRR8316902	Silver flowering stage	0.805
	SRR8316904	Silver flowering stage	1.146
	SRR8316905	Silver flowering stage	0.413
	SRR8316906	Gold flowering stage	1.769
	SRR8316907	Gold flowering stage	1.164
	SRR8316908	Gold flowering stage	1.727
SRP132670	SRR6706286	Control	1.853
	SRR6706287	Light intensity 50%	2.031
	SRR6706288	Light intensity 20%	1.350
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.556
	CNS0095593	Slightly white alabastrum(diploid) 2	0.450
	CNS0095594	Slightly white alabastrum(diploid) 3	0.758
	CNS0095595	Whole white alabastrum(diploid) 2	0.970
	CNS0095596	Whole white alabastrum(diploid) 3	0.502
	CNS0095597	Whole white alabastrum(diploid) 4	0.632
	CNS0095598	Silvery flower (diploied) 1	0.606
	CNS0095599	Silvery flower (diploied) 2	0.525
	CNS0095600	Silvery flower (diploied) 3	1.596
	CNS0095601	Golden flower (diploid) 1	0.724
	CNS0095602	Golden flower (diploid) 2	1.322
	CNS0095603	Golden flower (diploid) 3	1.604
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.167
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.694
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.804
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.889
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.727
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.664
	CNS0095610	Silvery flower (diploied) 1	1.525
	CNS0095611	Silvery flower (diploied) 2	2.253
	CNS0095612	Silvery flower (diploied) 3	1.834
	CNS0095613	Golden flower (tetraploid) 1	1.253
	CNS0095614	Golden flower (tetraploid) 2	1.271
	CNS0095615	Golden flower (tetraploid) 3	1.515
CRA001975	CRR073297	Stem 1	2.315
	CRR073298	Stem 2	1.441
	CRR073299	Stem 3	0.948
	CRR073300	Leaf 1	2.580
	CRR073301	Leaf 2	1.691
	CRR073302	Leaf 3	1.491
	CRR073303	Juvenile bud 1	1.581
	CRR073304	Juvenile bud 2	0.515
	CRR073305	Juvenile bud 3	0.948
	CRR073306	Third green 1	0.146
	CRR073307	Third green 2	0.197
	CRR073308	Third green 3	0.371
	CRR073309	Second white 1	0.351
	CRR073310	Second white 2	0.201
	CRR073311	Second white 3	0.595
	CRR073312	Silver flowering 1	0.565
	CRR073313	Silver flowering 2	0.053
	CRR073314	Silver flowering 3	0.197
	CRR073315	Gold flowering 1	0.076
	CRR073316	Gold flowering 2	0.678
	CRR073317	Gold flowering 3	0.274
	CRR073318	Tawny withering 1	0.529
	CRR073319	Tawny withering 2	0.739
	CRR073320	Tawny withering 3	0.288