Gene detail

Detail information of GWHGAAZE002801

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_001268435.1	3.8134E-134	gibberellin 2-beta-dioxygenase 8-like [Vitis vinifera]
COG	YP_003550811.1	3E-23	oxidoreductase
Swissprot	tr\|O49561\|G2OX8_ARATH	6E-113	Gibberellin 2-beta-dioxygenase 8
trEMBL	tr\|A5B7X5\|A5B7X5_VITVI	1E-134	GA2ox6 {ECO:0000313\|EMBL:AGQ42620.1}
TAIR10	AT4G21200.1	4E-80	gibberellin 2-oxidase 8

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	86531381	86534731	-
GWHAAZE00000001	mRNA	86531381	86534731	-
GWHAAZE00000001	exon	86534241	86534731	-
GWHAAZE00000001	exon	86531975	86532386	-
GWHAAZE00000001	exon	86531381	86531614	-
GWHAAZE00000001	CDS	86534241	86534731	-
GWHAAZE00000001	CDS	86531975	86532386	-
GWHAAZE00000001	CDS	86531381	86531614	-

Transcript Sequence
>GWHTAAZE002805 ATGGAATCAGAACCACCATTTTTAGAAACATACAAAACCCTTATCACTGACTTCTTGACCCAATCACAGAAAGAGAAAAAAACAGAAACCAATAAACCACAGCCACTACTATACAATAATGGTGATGATCATCAAGGAAAGCACTACGATGAGCTCCCCCTCATTGATCTAAGCCGCTTAGGCCTCGACGAGTTTGAGAGGAGAGAGTGCGGTAGAGAAATTGCAGAGGCTGCTAGAAAGTGGGGTTTCTTTCAAGTAGTGAATCATGGTATCTCTCAAGATGTTTTTGATAGGATGAAAATTGAGCAAGTTAAGTTGTTTAGGCAGCCATTTTGCAAGAAGGCTAATAAGAAGCTTTTGAACTTGTCGACCGGTTGTTACCGGTTTGGGAACCCAAGTGCCACTTCTCTCATGAATTTCTCGTGGTCCGAAGCTTTTCACATTCCTCTTTCCAGCATTTCTTGTTTGAGGGACTTCAACTGCCAAATTAGTATATTCCAGCCTTTTAATCATCCTGAATTAAATAATTGCAGGTCACCGATAGAGGAATTTGCGGAAGTGGTGTCTGATCTTGCTAAAAGAATAGCTGAAATATTAACAGAGAATCTGCCGGGGATGACTACTACTAGTACAACCAGTTCATTATTCTCACAAATAAATTGCTTGCCGAGTTCATGTTATCTTCGAATGAACAGATATCCACCATGCCCACTAGTATCTTCTTCTTCATCATCTTCAAAGATGGTATACGGTTTAGTACCACACACTGATAGCGACTTCCTCACCGTGTTGTACCAGCTGGACCATCATTTAGGAGGACTCCAGCTTCTCAAAGATGGTCAATGGCTTCCTGTTATACCTAATCCTCATTCTTTAATCATTAACATTGGCGATTTATTCCAGGCTTGGAGCAATGGTGTTTACAAGAGTGTTGAACATAGAGTGGTAATTAATGGAGAAGTAGAGAGGTTGTCAGTTGCCTACTTTTTATGTCCTTCCAATGAGACTGTGATTCAAAGTTGTATTCAACCTTCAATCTACAGAAAGTTTAGCTTCGGAGAATTCAGACAACAAACTCAACGTGATGTTAAGTCCACTGGCAGCAAAATAGGGCTCTCAAGGTTTCTCATCACATGA

Network for GWHGAAZE002801

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	52	148	3.00E-15
PF03171.21	2OG-FeII_Oxy	229	332	2.10E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04125	E1.14.11.13	Biosynthesis of secondary metabolites	map01110
K04125	E1.14.11.13	Diterpenoid biosynthesis	map00904

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.114
	SRR3591706	second leaf	0.135
	SRR3591707	mature leaf	0.146
	SRR3591708	Shoot apex	0.002
	SRR3591709	Stem	0.550
	SRR3591710	White floral bud	0.379
	SRR3591711	White flower	0.089
	SRR3591712	Green floral bud	0.344
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.038
	SRR8316896	Juvenile bud stage	0.068
	SRR8316897	Juvenile bud stage	0.242
	SRR8316894	Third green stage	0.058
	SRR8316900	Third green stage	0.017
	SRR8316901	Third green stage	0.045
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.084
	SRR8316903	Complete white stage	0.071
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.107
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.013
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.087
	SRR6706287	Light intensity 50%	0.045
	SRR6706288	Light intensity 20%	0.107
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.196
	CNS0095593	Slightly white alabastrum(diploid) 2	0.069
	CNS0095594	Slightly white alabastrum(diploid) 3	0.209
	CNS0095595	Whole white alabastrum(diploid) 2	0.155
	CNS0095596	Whole white alabastrum(diploid) 3	0.134
	CNS0095597	Whole white alabastrum(diploid) 4	0.086
	CNS0095598	Silvery flower (diploied) 1	0.341
	CNS0095599	Silvery flower (diploied) 2	0.075
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.004
	CNS0095603	Golden flower (diploid) 3	0.003
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.310
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.460
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.352
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.089
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.452
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.305
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.084
	CNS0095612	Silvery flower (diploied) 3	0.001
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.002
CRA001975	CRR073297	Stem 1	0.449
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.064
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.101
	CRR073302	Leaf 3	0.145
	CRR073303	Juvenile bud 1	0.210
	CRR073304	Juvenile bud 2	0.198
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.001
	CRR073308	Third green 3	0.007
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.005
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.002
	CRR073314	Silver flowering 3	0.002
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000