Gene detail

Detail information of GWHGAAZE002830

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP05766.1	4.9019E-171	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q5M759\|VP221_ARATH	2E-161	Vacuolar protein sorting-associated protein 22 homolog 1
trEMBL	tr\|A0A068UBD0\|A0A068UBD0_COFCA	2E-171	Coffea canephora DH200=94 genomic scaffold, scaffold_19 {ECO:0000313\|EMBL:CDP05766.1}
TAIR10	AT4G27040.4	1E-127	EAP30/Vps36 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	87046541	87050449	+
GWHAAZE00000001	mRNA	87046541	87050449	+
GWHAAZE00000001	exon	87046541	87046747	+
GWHAAZE00000001	exon	87046904	87047014	+
GWHAAZE00000001	exon	87047455	87047590	+
GWHAAZE00000001	exon	87047749	87047903	+
GWHAAZE00000001	exon	87048518	87048625	+
GWHAAZE00000001	exon	87050120	87050209	+
GWHAAZE00000001	exon	87050345	87050449	+
GWHAAZE00000001	five_prime_UTR	87046541	87046696	+
GWHAAZE00000001	CDS	87046697	87046747	+
GWHAAZE00000001	CDS	87046904	87047014	+
GWHAAZE00000001	CDS	87047455	87047590	+
GWHAAZE00000001	CDS	87047749	87047903	+
GWHAAZE00000001	CDS	87048518	87048625	+
GWHAAZE00000001	CDS	87050120	87050209	+
GWHAAZE00000001	CDS	87050345	87050449	+

Transcript Sequence
>GWHTAAZE002834 AGCGCTTGTTGCTGATTTGCAATTTAACATCCCTCTTTTCTTTTTGTTGCCTATACTATCATTATCAAATCTAGGATTCTTGCTTTACATTTATTTAATTTAATAGTCGCAGGGAAAAATCAACCAAAGGAAGTGAAGATACTATTGAATTGAATTATGAGACGGAGACCTGGAATCGGCGGTTTACAAACGGCTGCCACTGCTAGGGATCAGTACCGTCAGCTGGGAGAAAATGTGGCCAAGTTAAGAACCGATCTCATGAAAGAGCAGCTTTCCACATTTCGCTCTCAATTGGAAGACTTCGCTCGCAAACACAAGAATGACATTCGCAAGAATCCCGCCTTCAGATCACAGTTCCATGAGATGTGTGCTAATGTAGGAGTAGACCCCCTAGCCTCGAATAAGGGTTTCTGGGCTGAGTTGTTGGGGATCGGTGATTTCTATTATGAACTAGGTGTGCAAATTGTTGACATTTGCTTGGCTACTAGACCTCACAATGGCGGTTTGATCAACTTGGAGGAACTCTGTAAACTTCTTGGTCAGAGAAGAAAGAGCGCTCGTGAGGCTGTCTCTGAGGATGACTGCCTGCGTGCTATAAGTAAGCTGAAGGTATTAGGTAGTGGTTTTGAGGTAATTTCTGTTGGAAAGAGAAAGCTTGTGCGCTCCGTTCCAACTGAACTGAATAAAGACCACAATGAAATTTTAGAGCTGGCCCAGGCCCAAGGTTTTGTGACAGTTGAAGAGGTAGAGAGACGGCTCTCCTGGTCCTCTGGCCGTGCCACTGATGCCCTTGAAACTTTATTGGATGAGGGTCTTGCAATGATTGATGATGGCCATAGAGATGGTAGGCGTCGATACTGGTTCCCTTGCGTATCATCTATTTCCTCCAATGTAGGATCTGACACCCTCTAA

Network for GWHGAAZE002830

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04157.17	EAP30	6	225	8.70E-79

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12188	SNF8, EAP30	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0071985	biological_process	multivesicular body sorting pathway
GO:0000814	cellular_component	ESCRT II complex

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.571
	SRR3591706	second leaf	10.127
	SRR3591707	mature leaf	9.512
	SRR3591708	Shoot apex	19.567
	SRR3591709	Stem	23.234
	SRR3591710	White floral bud	17.587
	SRR3591711	White flower	17.861
	SRR3591712	Green floral bud	15.122
	SRR3591713	Yellow flower	32.100
SRP173429	SRR8316895	Juvenile bud stage	11.938
	SRR8316896	Juvenile bud stage	12.837
	SRR8316897	Juvenile bud stage	6.097
	SRR8316894	Third green stage	6.020
	SRR8316900	Third green stage	16.570
	SRR8316901	Third green stage	16.217
	SRR8316898	Complete white stage	10.693
	SRR8316899	Complete white stage	26.535
	SRR8316903	Complete white stage	14.365
	SRR8316902	Silver flowering stage	12.074
	SRR8316904	Silver flowering stage	15.354
	SRR8316905	Silver flowering stage	8.217
	SRR8316906	Gold flowering stage	27.117
	SRR8316907	Gold flowering stage	25.591
	SRR8316908	Gold flowering stage	28.569
SRP132670	SRR6706286	Control	20.143
	SRR6706287	Light intensity 50%	20.768
	SRR6706288	Light intensity 20%	22.571
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.529
	CNS0095593	Slightly white alabastrum(diploid) 2	12.767
	CNS0095594	Slightly white alabastrum(diploid) 3	10.490
	CNS0095595	Whole white alabastrum(diploid) 2	11.081
	CNS0095596	Whole white alabastrum(diploid) 3	8.735
	CNS0095597	Whole white alabastrum(diploid) 4	10.786
	CNS0095598	Silvery flower (diploied) 1	19.910
	CNS0095599	Silvery flower (diploied) 2	15.256
	CNS0095600	Silvery flower (diploied) 3	24.267
	CNS0095601	Golden flower (diploid) 1	15.818
	CNS0095602	Golden flower (diploid) 2	20.300
	CNS0095603	Golden flower (diploid) 3	19.264
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.526
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.041
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.592
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.096
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.062
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.322
	CNS0095610	Silvery flower (diploied) 1	24.310
	CNS0095611	Silvery flower (diploied) 2	22.083
	CNS0095612	Silvery flower (diploied) 3	22.643
	CNS0095613	Golden flower (tetraploid) 1	22.135
	CNS0095614	Golden flower (tetraploid) 2	23.879
	CNS0095615	Golden flower (tetraploid) 3	28.890
CRA001975	CRR073297	Stem 1	20.257
	CRR073298	Stem 2	16.806
	CRR073299	Stem 3	18.116
	CRR073300	Leaf 1	18.931
	CRR073301	Leaf 2	22.039
	CRR073302	Leaf 3	18.930
	CRR073303	Juvenile bud 1	17.421
	CRR073304	Juvenile bud 2	18.517
	CRR073305	Juvenile bud 3	20.931
	CRR073306	Third green 1	13.881
	CRR073307	Third green 2	16.256
	CRR073308	Third green 3	12.436
	CRR073309	Second white 1	14.721
	CRR073310	Second white 2	15.823
	CRR073311	Second white 3	14.972
	CRR073312	Silver flowering 1	14.736
	CRR073313	Silver flowering 2	14.291
	CRR073314	Silver flowering 3	14.439
	CRR073315	Gold flowering 1	10.518
	CRR073316	Gold flowering 2	11.872
	CRR073317	Gold flowering 3	6.750
	CRR073318	Tawny withering 1	19.815
	CRR073319	Tawny withering 2	17.699
	CRR073320	Tawny withering 3	12.593