Gene detail

Detail information of GWHGAAZE002858

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011046732.1	0	PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Populus euphratica]
COG	YP_002526717.1	4E-115	dihydrolipoamide succinyltransferase
Swissprot	tr\|Q8H107\|ODO2B_ARATH	0	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial (Precursor)
trEMBL	tr\|B9SVA1\|B9SVA1_RICCO	0	Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase, putative {ECO:0000313\|EMBL:EEF32474.1}
TAIR10	AT4G26910.1	3E-150	Dihydrolipoamide succinyltransferase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	87574877	87578462	+
GWHAAZE00000001	mRNA	87574877	87578462	+
GWHAAZE00000001	exon	87574877	87574922	+
GWHAAZE00000001	exon	87575013	87575068	+
GWHAAZE00000001	exon	87575157	87575201	+
GWHAAZE00000001	exon	87575308	87575580	+
GWHAAZE00000001	exon	87575709	87575803	+
GWHAAZE00000001	exon	87576436	87576526	+
GWHAAZE00000001	exon	87577161	87577260	+
GWHAAZE00000001	exon	87577977	87578155	+
GWHAAZE00000001	exon	87578271	87578462	+
GWHAAZE00000001	CDS	87574877	87574922	+
GWHAAZE00000001	CDS	87575013	87575068	+
GWHAAZE00000001	CDS	87575157	87575201	+
GWHAAZE00000001	CDS	87575308	87575580	+
GWHAAZE00000001	CDS	87575709	87575803	+
GWHAAZE00000001	CDS	87576436	87576526	+
GWHAAZE00000001	CDS	87577161	87577260	+
GWHAAZE00000001	CDS	87577977	87578155	+
GWHAAZE00000001	CDS	87578271	87578462	+

Transcript Sequence
>GWHTAAZE002862 ATGGGTGAATCTATAAGTGATGGCACTCTCGCGAAATTCCTGAAGCAACCTGGTGAGAGAGTAGAAGTTGATGAAGCAATTGCTCAAATCGAAACGGATAAGGTTACAATCGATGTAGCTAGTCCTGAAGCAGGGGTCATCCAAAAGTTTGTAGCCAGTGAAGGGGATACTGTGGAGCCAGGTACAAAGGTTGCTATCATCTCAAAATCTGGGGAAGGTGTAACCCATGTTGCTCCATCTGAGAAGGAATCTGACAAATTTGCTTCTCCACCACCTCCTGCTGAAAAGAAAGTAGAGGAGATTCTGAAACCTAAAGCTGAAACTGCTCCCATCTCTGAGAAGCCAAAGGTGATGGGTACCCCACCTCCTAAAAGTTCCGCTTCGGAGCCCCAGCTTCCCCCGAAAGAAAGGGAAAGACGAGTTCCTATGACAAGGCTGAGAAAAAGAGTTGCGACGCGTTTGAAAGATTCTCAAAACACATTTGCATTGTTGACAACATTCAATGAAGTTGATATGACTAATTTGATGAAACTCCGTTCTGATTACAAGGATGCCTTTGTTGAAAAGCATGGGGTCAAGTTGGGACTTATGTCTGGATTTGTAAAAGCTGCTGTAAGTGGACTCCAGAACCAGCCCATTATCAATGCAGTTATTGATGGGGATGATATCATATACAGAGACTACATAGATATCAGCATAGCTGTTGTTATCCGAAATGCAGAGAAGATGAATTTTGCTGACATAGAGAAGGAAATAAACACCCTGGCTAAGAAGGCAAATGATGGATCTATATCAATTGACGAGATGGCTGGAGGCTCATTCACAATATCAAATGGCGGTGTCTATGGAAGCCTTTTGAGTACCCCCATCATCAACCCCCCTCAGTCGGCAATCCTGGGGATGCATTCAATTGTGAGCCGTCCGATGGTGGTTGGAGGCAATATAGTTCCGAGACCAATGATGTATATTGCCCTCACATATGACCACAGGCTGATTGATGGAAGAGAGGCTGTGTTTTTCCTCAGACGTATTAAGGATGTTGTTGAGGATCCAAGGAGGTTGCTGCTTGATATATGA

Network for GWHGAAZE002858

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00364.23	Biotin_lipoyl	1	67	1.20E-14
PF00198.24	2-oxoacid_dh	136	356	9.00E-69

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00658	DLST, sucB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Citrate cycle	map00020
		Lysine degradation	map00310
		Tryptophan metabolism	map00380

Gene Ontology

GO term	Ontology	Name
GO:0006099	biological_process	tricarboxylic acid cycle
GO:0045252	cellular_component	oxoglutarate dehydrogenase complex
GO:0016746	molecular_function	transferase activity, transferring acyl groups
GO:0004149	molecular_function	dihydrolipoyllysine-residue succinyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.975
	SRR3591706	second leaf	5.651
	SRR3591707	mature leaf	3.891
	SRR3591708	Shoot apex	15.365
	SRR3591709	Stem	9.223
	SRR3591710	White floral bud	12.320
	SRR3591711	White flower	6.371
	SRR3591712	Green floral bud	50.023
	SRR3591713	Yellow flower	3.385
SRP173429	SRR8316895	Juvenile bud stage	8.701
	SRR8316896	Juvenile bud stage	14.604
	SRR8316897	Juvenile bud stage	13.427
	SRR8316894	Third green stage	9.173
	SRR8316900	Third green stage	39.781
	SRR8316901	Third green stage	43.407
	SRR8316898	Complete white stage	1.955
	SRR8316899	Complete white stage	8.042
	SRR8316903	Complete white stage	4.807
	SRR8316902	Silver flowering stage	2.255
	SRR8316904	Silver flowering stage	3.164
	SRR8316905	Silver flowering stage	1.461
	SRR8316906	Gold flowering stage	2.375
	SRR8316907	Gold flowering stage	3.492
	SRR8316908	Gold flowering stage	3.953
SRP132670	SRR6706286	Control	15.459
	SRR6706287	Light intensity 50%	17.077
	SRR6706288	Light intensity 20%	17.868
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.613
	CNS0095593	Slightly white alabastrum(diploid) 2	18.918
	CNS0095594	Slightly white alabastrum(diploid) 3	15.573
	CNS0095595	Whole white alabastrum(diploid) 2	27.342
	CNS0095596	Whole white alabastrum(diploid) 3	30.255
	CNS0095597	Whole white alabastrum(diploid) 4	22.738
	CNS0095598	Silvery flower (diploied) 1	6.075
	CNS0095599	Silvery flower (diploied) 2	4.715
	CNS0095600	Silvery flower (diploied) 3	3.288
	CNS0095601	Golden flower (diploid) 1	3.793
	CNS0095602	Golden flower (diploid) 2	2.872
	CNS0095603	Golden flower (diploid) 3	2.538
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.074
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.340
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.067
	CNS0095607	Whole white alabastrum(tetraploid) 1	42.569
	CNS0095608	Whole white alabastrum(tetraploid) 2	52.035
	CNS0095609	Whole white alabastrum(tetraploid) 3	50.550
	CNS0095610	Silvery flower (diploied) 1	3.407
	CNS0095611	Silvery flower (diploied) 2	2.964
	CNS0095612	Silvery flower (diploied) 3	4.771
	CNS0095613	Golden flower (tetraploid) 1	2.893
	CNS0095614	Golden flower (tetraploid) 2	2.214
	CNS0095615	Golden flower (tetraploid) 3	0.847
CRA001975	CRR073297	Stem 1	12.229
	CRR073298	Stem 2	13.601
	CRR073299	Stem 3	9.785
	CRR073300	Leaf 1	21.185
	CRR073301	Leaf 2	21.342
	CRR073302	Leaf 3	14.997
	CRR073303	Juvenile bud 1	18.104
	CRR073304	Juvenile bud 2	11.627
	CRR073305	Juvenile bud 3	5.136
	CRR073306	Third green 1	2.053
	CRR073307	Third green 2	1.279
	CRR073308	Third green 3	3.388
	CRR073309	Second white 1	0.382
	CRR073310	Second white 2	0.849
	CRR073311	Second white 3	1.196
	CRR073312	Silver flowering 1	0.568
	CRR073313	Silver flowering 2	0.506
	CRR073314	Silver flowering 3	1.364
	CRR073315	Gold flowering 1	3.095
	CRR073316	Gold flowering 2	5.492
	CRR073317	Gold flowering 3	2.082
	CRR073318	Tawny withering 1	9.345
	CRR073319	Tawny withering 2	8.283
	CRR073320	Tawny withering 3	10.886