Gene detail

Detail information of GWHGAAZE002861

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP15776.1	2.4568E-136	unnamed protein product [Coffea canephora]
COG	NP_248764.1	3E-28	serine/threonine protein kinase PpkA
Swissprot	tr\|Q9FZ36\|M3K2_ARATH	2E-51	Mitogen-activated protein kinase kinase kinase 2
trEMBL	tr\|A0A068V557\|A0A068V557_COFCA	9E-137	Coffea canephora DH200=94 genomic scaffold, scaffold_108 {ECO:0000313\|EMBL:CDP15776.1}
TAIR10	AT5G55090.1	5E-88	mitogen-activated protein kinase kinase kinase 15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	87608432	87609271	-
GWHAAZE00000001	mRNA	87608432	87609271	-
GWHAAZE00000001	exon	87608432	87609271	-
GWHAAZE00000001	CDS	87608432	87609271	-

Transcript Sequence
>GWHTAAZE002865 ATGGAGTGGACTAGGGGACCTACCATTGGCCAGGGATCCACCGCCACCGTCTCTCTAGCCACCACCGCCTCCGGAGAGTTATTTGCCGTCAAATCCTCCAATCTCTCCCACTCTAGCTTCTTGCAAAAAGAGCAACATTTTCTTTCTCAATTGAACTCTCCTTACATAATTGAGTACATGGGTTTTGATGTTACATACGAAAACAGCAATCCCATATACAATCTTTTCTTAGAGTACGTGCCCAACGGCACGCTTTCCGATACAATCAAGAAGCAAGGAGGTTCACTCGACGAGTCCACAATCCAATTTTACACAAATCATATCTTAAAGGGCTTGAATTACCTTCATTCAAATGGTTTGGTCCATTGTGACATTAAGCCCCAAAATGTCTTGATTGGTAAAAATGGTGCCAAGATTGCTGATTTGGGTTGTGCTAAAATGGTGGAAGATGGGTCTAAATTTTCCGGTACACCGGTTTTCATGGCGCCGGAGGTGGCTCGTGGCCAAGAACAGGGTTTTCAGGCGGATGTGTGGGCCCTTGGGTGCACCATCATCGAGATGGCCACTGGATCTAACCCTTGGCCGGAGATTGATGACCCTGTATCGGCTCTGTACAAAATTGGGTATGCCGGTGGGCTGCCGGAGATTCCGAGCTGGTTTTCCGGTGATGCAAAGGACTTTTTGGGCAAGTGTTTGAAGAGAGATGCGAAAGATCGGTGGACAGCTAAAGAACTTCTTGATCACAAGTTTTTGTGTAATTTGCAGTCTGATTGTGTGAAAACAGAGGAATGGGTAAGGGATTCTCCTACTTGTGTGTTGGAACAAGGCTTTTGGGATTCA

Network for GWHGAAZE002861

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	5	251	4.50E-57

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE11

KEGG pathway

KO	Enzyme	pathway	mapID
K20716	MAPKKK17_18	MAPK signaling pathway - plant	map04016

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.873
	SRR3591706	second leaf	1.844
	SRR3591707	mature leaf	1.758
	SRR3591708	Shoot apex	1.022
	SRR3591709	Stem	2.236
	SRR3591710	White floral bud	3.770
	SRR3591711	White flower	0.720
	SRR3591712	Green floral bud	3.613
	SRR3591713	Yellow flower	0.116
SRP173429	SRR8316895	Juvenile bud stage	0.513
	SRR8316896	Juvenile bud stage	0.353
	SRR8316897	Juvenile bud stage	0.192
	SRR8316894	Third green stage	0.434
	SRR8316900	Third green stage	1.544
	SRR8316901	Third green stage	1.250
	SRR8316898	Complete white stage	0.850
	SRR8316899	Complete white stage	1.440
	SRR8316903	Complete white stage	1.149
	SRR8316902	Silver flowering stage	0.978
	SRR8316904	Silver flowering stage	0.865
	SRR8316905	Silver flowering stage	0.807
	SRR8316906	Gold flowering stage	0.305
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.279
SRP132670	SRR6706286	Control	1.857
	SRR6706287	Light intensity 50%	2.248
	SRR6706288	Light intensity 20%	2.332
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.728
	CNS0095593	Slightly white alabastrum(diploid) 2	0.916
	CNS0095594	Slightly white alabastrum(diploid) 3	1.653
	CNS0095595	Whole white alabastrum(diploid) 2	1.008
	CNS0095596	Whole white alabastrum(diploid) 3	0.559
	CNS0095597	Whole white alabastrum(diploid) 4	0.181
	CNS0095598	Silvery flower (diploied) 1	1.318
	CNS0095599	Silvery flower (diploied) 2	0.093
	CNS0095600	Silvery flower (diploied) 3	0.502
	CNS0095601	Golden flower (diploid) 1	0.069
	CNS0095602	Golden flower (diploid) 2	0.300
	CNS0095603	Golden flower (diploid) 3	0.193
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.977
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.548
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.578
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.207
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.407
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.709
	CNS0095610	Silvery flower (diploied) 1	0.005
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.127
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.353
	CNS0095615	Golden flower (tetraploid) 3	0.205
CRA001975	CRR073297	Stem 1	1.234
	CRR073298	Stem 2	1.665
	CRR073299	Stem 3	2.136
	CRR073300	Leaf 1	0.744
	CRR073301	Leaf 2	0.715
	CRR073302	Leaf 3	1.254
	CRR073303	Juvenile bud 1	0.867
	CRR073304	Juvenile bud 2	0.767
	CRR073305	Juvenile bud 3	0.551
	CRR073306	Third green 1	0.529
	CRR073307	Third green 2	1.521
	CRR073308	Third green 3	1.008
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.054
	CRR073311	Second white 3	0.158
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.313
	CRR073314	Silver flowering 3	0.043
	CRR073315	Gold flowering 1	0.328
	CRR073316	Gold flowering 2	0.723
	CRR073317	Gold flowering 3	0.555
	CRR073318	Tawny withering 1	5.668
	CRR073319	Tawny withering 2	6.324
	CRR073320	Tawny withering 3	8.221