Detail information of GWHGAAZE002875


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAGO32051.10GDP-L-galactose phosphorylase [Actinidia rufa]
COGYP_314743.12E-13hypothetical protein Tbd_0985
Swissprottr|Q8RWE8|GGAP1_ARATH0GDP-L-galactose phosphorylase 1
trEMBLtr|V9NES9|V9NES9_9ERIC0GDP-L-galactose phosphorylase {ECO:0000313|EMBL:AGO32051.1}
TAIR10AT4G26850.10mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8788987187891857+
GWHAAZE00000001mRNA8788987187891857+
GWHAAZE00000001exon8788987187889991+
GWHAAZE00000001exon8789010187890222+
GWHAAZE00000001exon8789030987890368+
GWHAAZE00000001exon8789050187890743+
GWHAAZE00000001exon8789083087891015+
GWHAAZE00000001exon8789114687891397+
GWHAAZE00000001exon8789151087891857+
GWHAAZE00000001CDS8788987187889991+
GWHAAZE00000001CDS8789010187890222+
GWHAAZE00000001CDS8789030987890368+
GWHAAZE00000001CDS8789050187890743+
GWHAAZE00000001CDS8789083087891015+
GWHAAZE00000001CDS8789114687891397+
GWHAAZE00000001CDS8789151087891857+
Transcript Sequence

Network for GWHGAAZE002875

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14190VTC2_5 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Ascorbate and aldarate metabolismmap00053

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf210.439
SRR3591706second leaf446.502
SRR3591707mature leaf866.218
SRR3591708Shoot apex309.840
SRR3591709Stem592.856
SRR3591710White floral bud393.033
SRR3591711White flower525.805
SRR3591712Green floral bud349.540
SRR3591713Yellow flower370.161
SRP173429 SRR8316895Juvenile bud stage 187.788
SRR8316896Juvenile bud stage 225.707
SRR8316897Juvenile bud stage 135.384
SRR8316894Third green stage 91.406
SRR8316900Third green stage 195.022
SRR8316901Third green stage 185.864
SRR8316898Complete white stage 87.599
SRR8316899Complete white stage 315.383
SRR8316903Complete white stage 188.701
SRR8316902Silver flowering stage68.014
SRR8316904Silver flowering stage85.213
SRR8316905Silver flowering stage46.954
SRR8316906Gold flowering stage 98.070
SRR8316907Gold flowering stage 118.896
SRR8316908Gold flowering stage 150.862
SRP132670SRR6706286Control355.111
SRR6706287Light intensity 50%352.213
SRR6706288Light intensity 20%370.375
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1120.675
CNS0095593Slightly white alabastrum(diploid) 2130.057
CNS0095594Slightly white alabastrum(diploid) 3115.888
CNS0095595Whole white alabastrum(diploid) 2113.744
CNS0095596Whole white alabastrum(diploid) 385.651
CNS0095597Whole white alabastrum(diploid) 4123.225
CNS0095598Silvery flower (diploied) 1640.169
CNS0095599Silvery flower (diploied) 2565.307
CNS0095600Silvery flower (diploied) 3491.703
CNS0095601Golden flower (diploid) 1634.034
CNS0095602Golden flower (diploid) 2627.062
CNS0095603Golden flower (diploid) 3611.376
CNS0095604Slightly white alabastrum(tetraploid) 1159.412
CNS0095605Slightly white alabastrum(tetraploid) 2125.788
CNS0095606Slightly white alabastrum(tetraploid) 3333.924
CNS0095607Whole white alabastrum(tetraploid) 1110.753
CNS0095608Whole white alabastrum(tetraploid) 2102.818
CNS0095609Whole white alabastrum(tetraploid) 3256.405
CNS0095610Silvery flower (diploied) 1264.632
CNS0095611Silvery flower (diploied) 2438.846
CNS0095612Silvery flower (diploied) 3541.197
CNS0095613Golden flower (tetraploid) 1114.591
CNS0095614Golden flower (tetraploid) 2186.618
CNS0095615Golden flower (tetraploid) 3250.991
CRA001975CRR073297Stem 1172.361
CRR073298Stem 2161.769
CRR073299Stem 3182.369
CRR073300Leaf 1160.710
CRR073301Leaf 2175.105
CRR073302Leaf 3146.148
CRR073303Juvenile bud 1167.160
CRR073304Juvenile bud 2184.912
CRR073305Juvenile bud 3301.116
CRR073306Third green 1145.682
CRR073307Third green 2144.043
CRR073308Third green 3157.877
CRR073309Second white 186.479
CRR073310Second white 240.351
CRR073311Second white 335.894
CRR073312Silver flowering 138.685
CRR073313Silver flowering 251.481
CRR073314Silver flowering 354.348
CRR073315Gold flowering 1542.267
CRR073316Gold flowering 2631.488
CRR073317Gold flowering 3759.549
CRR073318Tawny withering 1371.130
CRR073319Tawny withering 2334.285
CRR073320Tawny withering 3303.408