Gene detail

Detail information of GWHGAAZE002888

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009770773.1	1.3976E-161	PREDICTED: vacuolar protein sorting-associated protein VTA1 homolog [Nicotiana sylvestris]
Swissprot	tr\|Q9SZ15\|LIP5_ARATH	4E-110	Protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 {ECO:0000303\|PubMed:17468262}
trEMBL	tr\|F6HET5\|F6HET5_VITVI	6E-151	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50697.1}
TAIR10	AT4G26750.1	4E-87	hydroxyproline-rich glycoprotein family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	88104131	88107658	+
GWHAAZE00000001	mRNA	88104131	88107658	+
GWHAAZE00000001	exon	88104131	88104217	+
GWHAAZE00000001	exon	88104695	88104804	+
GWHAAZE00000001	exon	88106408	88106483	+
GWHAAZE00000001	exon	88106645	88106776	+
GWHAAZE00000001	exon	88106897	88107658	+
GWHAAZE00000001	CDS	88104131	88104217	+
GWHAAZE00000001	CDS	88104695	88104804	+
GWHAAZE00000001	CDS	88106408	88106483	+
GWHAAZE00000001	CDS	88106645	88106776	+
GWHAAZE00000001	CDS	88106897	88107658	+

Transcript Sequence
>GWHTAAZE002892 ATGGAACGAGGGTTGAAGATTCCTCAGAACGAACGAACAAAGACCACCAACGCGATCCTCGTTTCGCTCATGAAACAACTCGAGAAGGATAAGAAGTCACTGAAGCTGGCTCCTGATGACAATCTTCACTTGGAGGGGTTTGCCTCGAGTGTCTTTGCAAAGGCAGACAAGCAAGATCGGGCTGGCCGAGCAGATTTGAGTACTGCAAAGACATTTTATGCTGCGAGCATTTTCTTTGAAATTCTTAATCAATTTGGTGAACTTCAACCTGATATTGAGCAAAAACAGAAATATGCAGCATGGAAAGCCGCAGATATAAGGAAAGCCATGAAAGAAGGAAGGAAGCCTGTACCAGGCCCCCCTGGTGGTGATCAAGATCCATCCAGTACCCTAAGTAGTGAATATGATCTCGAACCTAGCAGACCCGACCTGGTTGTCAAGCCCGCACCAGAATCTGGCCCATCACCTCAGTCGTACGATAGAGTCGATCCCCAACAGTTTCCAAAAATTCCACCATCACCTCCTTCAAATATTCCGTCATCACCTCCCTCAAACATTCCACCCTCATCTCCTTACCCTACAGATGATTATCCACACAATTTCCAACAACCTCCTCCAACCAACAGATTTGAAAAATCTACGGAAGATTATTCCTCCCACAATTTCCTTCAACCTCCACCCAACGGAACTGAAAATCCTACTTATTCTCCACAATTTCAACAACCCTATCCCCTAGAACCCCAACTGCACTTGCCACACAATTACGTGTCTACTGAAACTCCATCGCACCCATATCCCAATTTCCAATCTTACCCTAGTTTCACCGAGACAAGCCTTCCAGCAGCTCCATCTCACTACCCTTCTTATTATCAAGGATCTGAAGCTTCCTATCCCACCCCACCACCAGCTTCTAACACGTCGAACTACCCATCAGCGGTTCAGTATGATTCAAGTGGGAGAAATGGGAGTGGGTCCCATGCTGCACCAACCCCTGCACAAGCATATCAATACGACAGCAATTACCAGCCTCCAGCTGAAAAAATTGCTGAGGCACACAAGGCTGCCAGGTTTGCAGTTGGGGCGTTGGCATTTGATGATGTTTCTATAGCGGTGGACTACCTTAAGAAGTCGCTTGAGTTATTGACTAATTCATCGGCGGGTCAGTAA

Network for GWHGAAZE002888

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04652.17	Vta1	2	112	2.80E-28
PF18097.2	Vta1_C	346	382	1.90E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12199	VTA1, LIP5	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	41.288
	SRR3591706	second leaf	17.447
	SRR3591707	mature leaf	17.131
	SRR3591708	Shoot apex	28.958
	SRR3591709	Stem	44.605
	SRR3591710	White floral bud	55.288
	SRR3591711	White flower	75.427
	SRR3591712	Green floral bud	47.350
	SRR3591713	Yellow flower	75.023
SRP173429	SRR8316895	Juvenile bud stage	21.896
	SRR8316896	Juvenile bud stage	33.440
	SRR8316897	Juvenile bud stage	16.842
	SRR8316894	Third green stage	11.324
	SRR8316900	Third green stage	33.310
	SRR8316901	Third green stage	36.836
	SRR8316898	Complete white stage	23.386
	SRR8316899	Complete white stage	50.181
	SRR8316903	Complete white stage	46.312
	SRR8316902	Silver flowering stage	36.404
	SRR8316904	Silver flowering stage	40.867
	SRR8316905	Silver flowering stage	22.538
	SRR8316906	Gold flowering stage	59.251
	SRR8316907	Gold flowering stage	62.450
	SRR8316908	Gold flowering stage	50.137
SRP132670	SRR6706286	Control	46.018
	SRR6706287	Light intensity 50%	44.299
	SRR6706288	Light intensity 20%	40.059
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	28.455
	CNS0095593	Slightly white alabastrum(diploid) 2	24.142
	CNS0095594	Slightly white alabastrum(diploid) 3	23.925
	CNS0095595	Whole white alabastrum(diploid) 2	19.529
	CNS0095596	Whole white alabastrum(diploid) 3	21.638
	CNS0095597	Whole white alabastrum(diploid) 4	23.860
	CNS0095598	Silvery flower (diploied) 1	33.413
	CNS0095599	Silvery flower (diploied) 2	25.058
	CNS0095600	Silvery flower (diploied) 3	68.820
	CNS0095601	Golden flower (diploid) 1	31.600
	CNS0095602	Golden flower (diploid) 2	58.983
	CNS0095603	Golden flower (diploid) 3	53.181
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.928
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.964
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.146
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.487
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.491
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.362
	CNS0095610	Silvery flower (diploied) 1	51.672
	CNS0095611	Silvery flower (diploied) 2	54.244
	CNS0095612	Silvery flower (diploied) 3	56.572
	CNS0095613	Golden flower (tetraploid) 1	38.826
	CNS0095614	Golden flower (tetraploid) 2	46.493
	CNS0095615	Golden flower (tetraploid) 3	67.419
CRA001975	CRR073297	Stem 1	60.378
	CRR073298	Stem 2	57.329
	CRR073299	Stem 3	59.763
	CRR073300	Leaf 1	70.101
	CRR073301	Leaf 2	76.251
	CRR073302	Leaf 3	46.139
	CRR073303	Juvenile bud 1	62.415
	CRR073304	Juvenile bud 2	63.808
	CRR073305	Juvenile bud 3	106.231
	CRR073306	Third green 1	87.816
	CRR073307	Third green 2	91.254
	CRR073308	Third green 3	89.636
	CRR073309	Second white 1	107.038
	CRR073310	Second white 2	93.360
	CRR073311	Second white 3	97.476
	CRR073312	Silver flowering 1	120.459
	CRR073313	Silver flowering 2	139.097
	CRR073314	Silver flowering 3	121.586
	CRR073315	Gold flowering 1	23.976
	CRR073316	Gold flowering 2	37.766
	CRR073317	Gold flowering 3	24.042
	CRR073318	Tawny withering 1	64.280
	CRR073319	Tawny withering 2	51.266
	CRR073320	Tawny withering 3	69.843