Gene detail

Detail information of GWHGAAZE002901

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010099977.1	1.8762E-118	Upstream activation factor subunit spp27 [Morus notabilis]
COG	YP_002496615.1	2E-20	SWIB/MDM2 domain-containing protein
Swissprot	tr\|Q68RZ3\|CYF_PANGI	5E-31	Apocytochrome f {ECO:0000255\|HAMAP-Rule:MF_00610} (Precursor)
trEMBL	tr\|W9RBI2\|W9RBI2_9ROSA	7E-119	Upstream activation factor subunit spp27 {ECO:0000313\|EMBL:EXB81082.1}
TAIR10	AT4G22360.1	3E-50	SWIB complex BAF60b domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	88300459	88305539	+
GWHAAZE00000001	mRNA	88300459	88305539	+
GWHAAZE00000001	exon	88300459	88300859	+
GWHAAZE00000001	exon	88302687	88302798	+
GWHAAZE00000001	exon	88302891	88303062	+
GWHAAZE00000001	exon	88303160	88303347	+
GWHAAZE00000001	exon	88304546	88304737	+
GWHAAZE00000001	exon	88305414	88305539	+
GWHAAZE00000001	CDS	88300459	88300859	+
GWHAAZE00000001	CDS	88302687	88302798	+
GWHAAZE00000001	CDS	88302891	88303062	+
GWHAAZE00000001	CDS	88303160	88303347	+
GWHAAZE00000001	CDS	88304546	88304737	+
GWHAAZE00000001	CDS	88305414	88305539	+

Transcript Sequence
>GWHTAAZE002905 ATGGTATCCGACCAGGACATAGCCGAGGCTTTGGAGTCTCTTCTTCGCGAAACAAACCCTAACGTTACCTTCACCTCTCTAAACGCTGTCGTTCACCACCTCGAATCCAGACTAGGCCTAGCCCTCAATCACAAGGTCGATTTCATCCGTACCCAAATCCACTACCTACTCCGACCACCACAACCACCGTTCCACCACCATCCCCCTCCCAAAGACTATTTCACTACTCACCCCCAAAACCCTAATTTCCATCCTACTTCCTCTCAGTTGCCCCCCAATTTCCCTCTTCAACGTCCGGAGGAGTACGGATTCCGGCCGCCGGTGACCAAAACGGAGGCCTACGTTACTGATGTGGCACCCACTGCAGCTGCCCCCGCTGATCTCCAAGCCCCCAAAGAGAGTTCCAAAAGTGGGAAAAAACGAAGAGGTGGCCCAGGTGGCCTAAACAAACTCTGTGGTGTTTCTCCTGAACTTCAGGTCATTGTTGGCCAGCCGACATTGCCAAGGACTGAGATTGTGAAGCAGCTGTGGGCATACATACGGAAAAACAATCTTCAAGATCCAAGTAATAAGAGGAAGATTATTTGCAATGATGAGCTTCGTGTGGTATTTGAGACAGACTGTACAGATATGTTCAAGATGAATAAGTTGCTAGCTAAACACATCATCCCCCTTGAACCTACAAAGCAAACAGCTAAAAAATCTAAGAAATTGAAGGTAGATGCGGAATCTGGAAGTAGAAGTGATGAACCTGTTCCAATTGTAGTATTGTCCGAATCACTTGCAAATTTTTTTGGTACTGGCGAAAGAGAGATGTCACAGGCAGAAGTTATAAGACGAGTCTGGGAATATGTGAAGGTCAACCAACTTGAGCAGGGTTATGAAAATCCATGCGAAGCGATGGGGCGTATTGGATGTGCCAGTTGCCATTTAGCTAATAAGCCCGTGGATATTGAGGTTCCACAAGCGATACTTCCTGATACTGTGATTGAAGCGGTTGTTCGAATCCCTTATGATATACAACTGAAACAAAATCTTGCTAATGGTAAAAAGGGGGCTTTGAATGACCCAATTAATGCTATGGTGGTACTATGTGATGCAAAACTTCAAGAGCTTTTTGGATGCGAAAGTATTTCTGCTTTGGGAATACCTGAGATGTTGGCACGCCATCATTTATTTAAGAGATCTTGA

Network for GWHGAAZE002901

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08766.12	DEK_C	2	56	3.60E-08
PF02201.19	SWIB	152	222	1.10E-26
PF02201.19	SWIB	255	292	4.00E-07
PF16639.6	Apocytochr_F_N	292	365	1.10E-23
PF02201.19	SWIB	352	390	8.50E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SWI/SNF-BAF60b

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0015979	biological_process	photosynthesis
GO:0031361	cellular_component	integral component of thylakoid membrane
GO:0005515	molecular_function	protein binding
GO:0005506	molecular_function	iron ion binding
GO:0009055	molecular_function	electron transfer activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.640
	SRR3591706	second leaf	7.581
	SRR3591707	mature leaf	6.440
	SRR3591708	Shoot apex	16.700
	SRR3591709	Stem	8.189
	SRR3591710	White floral bud	9.442
	SRR3591711	White flower	9.511
	SRR3591712	Green floral bud	10.060
	SRR3591713	Yellow flower	7.820
SRP173429	SRR8316895	Juvenile bud stage	6.955
	SRR8316896	Juvenile bud stage	10.225
	SRR8316897	Juvenile bud stage	4.127
	SRR8316894	Third green stage	4.267
	SRR8316900	Third green stage	9.591
	SRR8316901	Third green stage	11.177
	SRR8316898	Complete white stage	5.207
	SRR8316899	Complete white stage	17.545
	SRR8316903	Complete white stage	9.241
	SRR8316902	Silver flowering stage	5.616
	SRR8316904	Silver flowering stage	7.555
	SRR8316905	Silver flowering stage	3.815
	SRR8316906	Gold flowering stage	11.050
	SRR8316907	Gold flowering stage	10.583
	SRR8316908	Gold flowering stage	12.309
SRP132670	SRR6706286	Control	10.944
	SRR6706287	Light intensity 50%	10.240
	SRR6706288	Light intensity 20%	8.336
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.527
	CNS0095593	Slightly white alabastrum(diploid) 2	5.903
	CNS0095594	Slightly white alabastrum(diploid) 3	8.244
	CNS0095595	Whole white alabastrum(diploid) 2	3.599
	CNS0095596	Whole white alabastrum(diploid) 3	4.753
	CNS0095597	Whole white alabastrum(diploid) 4	5.239
	CNS0095598	Silvery flower (diploied) 1	9.994
	CNS0095599	Silvery flower (diploied) 2	7.563
	CNS0095600	Silvery flower (diploied) 3	8.557
	CNS0095601	Golden flower (diploid) 1	10.834
	CNS0095602	Golden flower (diploid) 2	13.141
	CNS0095603	Golden flower (diploid) 3	13.541
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.154
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.037
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.445
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.295
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.818
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.120
	CNS0095610	Silvery flower (diploied) 1	8.757
	CNS0095611	Silvery flower (diploied) 2	11.591
	CNS0095612	Silvery flower (diploied) 3	9.159
	CNS0095613	Golden flower (tetraploid) 1	7.556
	CNS0095614	Golden flower (tetraploid) 2	8.530
	CNS0095615	Golden flower (tetraploid) 3	10.603
CRA001975	CRR073297	Stem 1	11.228
	CRR073298	Stem 2	14.330
	CRR073299	Stem 3	11.062
	CRR073300	Leaf 1	12.487
	CRR073301	Leaf 2	12.972
	CRR073302	Leaf 3	8.478
	CRR073303	Juvenile bud 1	9.080
	CRR073304	Juvenile bud 2	7.099
	CRR073305	Juvenile bud 3	11.441
	CRR073306	Third green 1	3.957
	CRR073307	Third green 2	3.431
	CRR073308	Third green 3	4.600
	CRR073309	Second white 1	4.202
	CRR073310	Second white 2	4.184
	CRR073311	Second white 3	5.398
	CRR073312	Silver flowering 1	4.154
	CRR073313	Silver flowering 2	4.387
	CRR073314	Silver flowering 3	3.813
	CRR073315	Gold flowering 1	3.779
	CRR073316	Gold flowering 2	4.938
	CRR073317	Gold flowering 3	5.224
	CRR073318	Tawny withering 1	7.353
	CRR073319	Tawny withering 2	7.375
	CRR073320	Tawny withering 3	6.860