Gene detail

Detail information of GWHGAAZE002926

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP13733.1	1.2867E-138	unnamed protein product [Coffea canephora]
COG	YP_001980889.1	1E-68	serine acetyltransferase
Swissprot	tr\|Q39218\|SAT3_ARATH	1E-109	Serine acetyltransferase 3, mitochondrial (Precursor)
trEMBL	tr\|A0A068V1J5\|A0A068V1J5_COFCA	5E-139	Coffea canephora DH200=94 genomic scaffold, scaffold_76 {ECO:0000313\|EMBL:CDP13733.1}
TAIR10	AT3G13110.1	6E-90	serine acetyltransferase 2;2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	88792384	88793369	-
GWHAAZE00000001	mRNA	88792384	88793369	-
GWHAAZE00000001	exon	88792384	88792866	-
GWHAAZE00000001	exon	88792950	88793369	-
GWHAAZE00000001	CDS	88792950	88793369	-
GWHAAZE00000001	CDS	88792384	88792866	-

Transcript Sequence
>GWHTAAZE002930 ATGGCCACTTGTATACACGCGGACACCTCCCAAATCGACGATCATGTCTATGATTACGCCAAAATTTACCGACCCAATTCGCAACATTTTTTTTCTTGCGTACCCATTAGCCAGAATCACCCCAAAACCATCTACAAACACCCCATTGAAGAAAACATCAGTCGAGGTCGAGATGAAGATGATTTATGGCTGACAATGAAAGATGAAGCTCGACGTGGTATTGAACAAGAACCCATATTGTCGAGTTACTATTTTAGTTCAATCTTGGCGTATGATTCGCTAGAGGGAGCCCTAGCCAATCATCTCTCAGTAAAACTGAACAATTCCAGTCTTTCTACTGATACCCTCAATGATCTTTTTGTGGGTGTGCTCACAGAGGACCAACAAATCACTAGAGCAATTAGATATGATTTAAGGGCGGATAGCACACAAGCTATGGTCACAGGGAGACTTTTTTTGGCACTGGTAATACAAAATAGGGTATCTGAGGTATTTGCAGTGGACATTCATCCCGGAGCAAAGATTGGCCGTGGAATACTGCTCGACCATGCCACAGGAGTTGTGATCGGAGAGACAGCAGTTATCGGAGATAATGTGTCAATTTTGCACAATGTGACATTGGGTGGCACAGGTAAGGCTAGTGGGGACAGGCACCCAAAAATTGGCGATGGGGTGTTAATAGGGGCAGGGACTTGTGTATTGGGGAATGTGAAAATTGGAAATGGGGCTAAAATTGGGGCAGGTTCTGTGGTGTTGAAGGAGGTACCAGCTAGGACTACTGCAGTTGGTAACCCCGCTAGGTTGATTGGAGGAAAGGAAAATCCATCTAGGCTTGATAGGATTCCTAGTCATACAATGGACCATGTTTCACATATATCAGAGTGGTCTGATTATGTGATTTAG

Network for GWHGAAZE002926

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06426.15	SATase_N	62	140	1.20E-18
PF00132.25	Hexapep	173	209	0.0013
PF00132.25	Hexapep	218	252	1.60E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00640	cysE	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Sulfur metabolism	map00920
		Cysteine and methionine metabolism	map00270
		Biofilm formation - Vibrio cholerae	map05111

Gene Ontology

GO term	Ontology	Name
GO:0006535	biological_process	cysteine biosynthetic process from serine
GO:0005737	cellular_component	cytoplasm
GO:0016740	molecular_function	transferase activity
GO:0009001	molecular_function	serine O-acetyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.181
	SRR3591706	second leaf	0.280
	SRR3591707	mature leaf	1.423
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	2.155
	SRR3591710	White floral bud	4.855
	SRR3591711	White flower	6.876
	SRR3591712	Green floral bud	6.131
	SRR3591713	Yellow flower	13.177
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.089
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.048
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.024
	SRR6706288	Light intensity 20%	0.001
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.198
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.054
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.017
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.150
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.053
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.165
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.003
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.246
	CRR073304	Juvenile bud 2	0.347
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.047
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.072
	CRR073316	Gold flowering 2	0.149
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000