Gene detail

Detail information of GWHGAAZE002931

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002298859.2	2.0939E-142	hypothetical protein POPTR_0001s37470g [Populus trichocarpa]
trEMBL	tr\|A9PDK4\|A9PDK4_POPTR	8E-143	Uncharacterized protein {ECO:0000313\|EMBL:EEE83664.2}
TAIR10	AT5G55610.1	2E-65	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	88829046	88832432	+
GWHAAZE00000001	mRNA	88829046	88832432	+
GWHAAZE00000001	exon	88829046	88829387	+
GWHAAZE00000001	exon	88831268	88831352	+
GWHAAZE00000001	exon	88831431	88831517	+
GWHAAZE00000001	exon	88832009	88832251	+
GWHAAZE00000001	exon	88832356	88832432	+
GWHAAZE00000001	CDS	88829046	88829387	+
GWHAAZE00000001	CDS	88831268	88831352	+
GWHAAZE00000001	CDS	88831431	88831517	+
GWHAAZE00000001	CDS	88832009	88832251	+
GWHAAZE00000001	CDS	88832356	88832432	+

Transcript Sequence
>GWHTAAZE002935 TTCGGTGCAAAATCAGTCGCACACTGTGACGCTGGCGTAGCACTACCTGGTGATTACATTTCTAGCATACAAACTGCTTCTCGAAATATCTTTCAGTATAATTCTCCGAAAGATGGTGTGAAAGAGTACAATATCGAGATAAAACCTTTGTTCTCAGCTTTCCAATGGAAGGCTTTTGCACTAACATCATTGAGGTCTTTTCTATTATTTTATTTACCACTTTTGGAGCCTCGATCGAACATGGAAGAGGATGATGACGACTTCCAACCAAACACTCCGGAAGAAAACCGTGTGGATTTGGTTGTTCCCTTTAAGAAATCAGTGAAGCAAATCATCCGTGAAACTACAGTTGTAACTACTAGACGTATTCTAGAACGTCTTGCTGTCTGTTTTGCTTCACCGCGGATGGCATGGAAACTTCTTAAAGATTTACCAAAATCAGCAGTGCGCAAGGCTGGAAGGGGAATGCCAACTTTAGTTTACTTCTTCAGTGTTAGCAGGACAACTTTCAGAGGACATTGTCTAGGAGTTGCAGCATCATGGCTTGTTCAAGTTGGGATCGATATCTACCAATTCTTTTCATGCACTTGCCACTCTAAAGAAGAGACTAATAACATTGACAAAGCAGAACAGGCTCGGCTTCTTGGGAAGAAGGTTTGTGGGGTTACAATCAGGTGCGGTGCATCACTGGTTTTTGCTTCTATAGGAGCAGGGCTAGGCGCAAAAGTTTTTCAGCCCTCAACTGGTCAATGGATTGGATGTGCAATGGGGGATTTGGCAGGGCCTATGATTGTGTCATTTTGCTGTGAGAAAGTGTTTCATGTGTATCTTTAG

Network for GWHGAAZE002931

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0271	GO:0006413 translational initiation GOslim:biological_process GO:0008168 methyltransferase activity GOslim:molecular_function

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	63.471
	SRR3591706	second leaf	28.351
	SRR3591707	mature leaf	31.590
	SRR3591708	Shoot apex	41.110
	SRR3591709	Stem	53.776
	SRR3591710	White floral bud	32.243
	SRR3591711	White flower	42.269
	SRR3591712	Green floral bud	45.324
	SRR3591713	Yellow flower	33.786
SRP173429	SRR8316895	Juvenile bud stage	30.728
	SRR8316896	Juvenile bud stage	45.024
	SRR8316897	Juvenile bud stage	29.046
	SRR8316894	Third green stage	20.463
	SRR8316900	Third green stage	60.879
	SRR8316901	Third green stage	54.496
	SRR8316898	Complete white stage	23.774
	SRR8316899	Complete white stage	78.890
	SRR8316903	Complete white stage	37.873
	SRR8316902	Silver flowering stage	22.698
	SRR8316904	Silver flowering stage	30.942
	SRR8316905	Silver flowering stage	14.809
	SRR8316906	Gold flowering stage	41.904
	SRR8316907	Gold flowering stage	42.503
	SRR8316908	Gold flowering stage	51.430
SRP132670	SRR6706286	Control	40.938
	SRR6706287	Light intensity 50%	42.390
	SRR6706288	Light intensity 20%	46.934
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.912
	CNS0095593	Slightly white alabastrum(diploid) 2	38.571
	CNS0095594	Slightly white alabastrum(diploid) 3	39.464
	CNS0095595	Whole white alabastrum(diploid) 2	27.093
	CNS0095596	Whole white alabastrum(diploid) 3	35.296
	CNS0095597	Whole white alabastrum(diploid) 4	28.146
	CNS0095598	Silvery flower (diploied) 1	36.485
	CNS0095599	Silvery flower (diploied) 2	36.489
	CNS0095600	Silvery flower (diploied) 3	47.155
	CNS0095601	Golden flower (diploid) 1	31.807
	CNS0095602	Golden flower (diploid) 2	44.985
	CNS0095603	Golden flower (diploid) 3	37.241
	CNS0095604	Slightly white alabastrum(tetraploid) 1	40.528
	CNS0095605	Slightly white alabastrum(tetraploid) 2	37.509
	CNS0095606	Slightly white alabastrum(tetraploid) 3	53.077
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.033
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.010
	CNS0095609	Whole white alabastrum(tetraploid) 3	43.081
	CNS0095610	Silvery flower (diploied) 1	53.790
	CNS0095611	Silvery flower (diploied) 2	45.705
	CNS0095612	Silvery flower (diploied) 3	30.504
	CNS0095613	Golden flower (tetraploid) 1	30.534
	CNS0095614	Golden flower (tetraploid) 2	44.852
	CNS0095615	Golden flower (tetraploid) 3	25.631
CRA001975	CRR073297	Stem 1	43.498
	CRR073298	Stem 2	40.262
	CRR073299	Stem 3	41.284
	CRR073300	Leaf 1	46.394
	CRR073301	Leaf 2	44.697
	CRR073302	Leaf 3	45.359
	CRR073303	Juvenile bud 1	51.942
	CRR073304	Juvenile bud 2	44.555
	CRR073305	Juvenile bud 3	39.750
	CRR073306	Third green 1	15.974
	CRR073307	Third green 2	14.660
	CRR073308	Third green 3	17.758
	CRR073309	Second white 1	21.463
	CRR073310	Second white 2	20.798
	CRR073311	Second white 3	15.012
	CRR073312	Silver flowering 1	8.932
	CRR073313	Silver flowering 2	10.111
	CRR073314	Silver flowering 3	11.544
	CRR073315	Gold flowering 1	30.210
	CRR073316	Gold flowering 2	42.983
	CRR073317	Gold flowering 3	22.007
	CRR073318	Tawny withering 1	47.917
	CRR073319	Tawny withering 2	33.483
	CRR073320	Tawny withering 3	38.178