Gene detail

Detail information of GWHGAAZE002938

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002265729.1	0	PREDICTED: probable pectate lyase 22 [Vitis vinifera]
COG	YP_001628843.1	2E-25	hypothetical protein Bpet0241
Swissprot	tr\|Q9FM66\|PLY21_ARATH	1E-174	Putative pectate lyase 21 (Precursor)
trEMBL	tr\|F6I555\|F6I555_VITVI	0	Pectate lyase {ECO:0000256\|RuleBase:RU361123}
TAIR10	AT4G13710.1	3E-140	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	88937402	88939085	-
GWHAAZE00000001	mRNA	88937402	88939085	-
GWHAAZE00000001	exon	88937402	88937620	-
GWHAAZE00000001	exon	88937701	88937839	-
GWHAAZE00000001	exon	88938060	88938797	-
GWHAAZE00000001	exon	88938988	88939085	-
GWHAAZE00000001	CDS	88938988	88939085	-
GWHAAZE00000001	CDS	88938060	88938797	-
GWHAAZE00000001	CDS	88937701	88937839	-
GWHAAZE00000001	CDS	88937402	88937620	-

Transcript Sequence
>GWHTAAZE002942 ATGCCAACCTCCCATCTCTTCTCCCTTTTCTTTCTCTTACATGCTTACTTCACATCCTCTGCCCGTCCCCTAGTGCACATTTCAGAACCAGTTGCATGGAGCTCCATGAAAGACTCAAGCGGGGGAGAAAGATCATGTAAAACTGGGAACCCCATTGATGACTGTTGGAGGTGTGACCCTGACTGGGAAACCAACCGTAGAATGCTAGCTGATTGCGCATTAGGGTTTGGACGGAATGCAATTGGCGGTAGAGATGGTGAATTCTACATAGTCACCGACTCGGAAAACGATGACCCCAAGAACCCTAACTCCGGCACTCTCCGGTATGCAGCTATCCAAGAAGAACCATTATGGATCATCTTTGACCATGACATGGTCATTCACTTGAAGGCGGAACTAATAATGAACTCTTACAAGACCATAGATGGTAGAGGATTTAACATTGAGATCTCAAATGGACCGTGCTTGACCATACAGAATGCGAGCAATATCATCATACACGGCATTTATGTGCATGGATGTGTACCAGGCGGGAGTATCGTGGTGAGGGACAAACCGGATCACTATGGAATGAGAGACGTCTCTGATGGGGATGGGATATCGTTGATTGGGGCCAGGGATGTGTGGATCGATCACTGTACGCTAGCCAAATGTAGTGACGGACTCATTGATGTAGTGTATGGATCTACTGCCATAACCATTTCAAACAACTACATGTTCGATCATAATGAGGTCATGCTTATGGGTCATGATGATGATTTTCTTGCTGATAAGAATATGCAGGTCACCATTGCCTTTAATTACTTTGGGGAAGGTCTGATTCAACGAATGCCTAGGTGTAGACATGGGTATTTTCATATTGTGAATAATGTATATACGGGTTGGAAAATGTATGCTATTGGCGGAAGCGCAAATCCAACCATAAATAGCCAAGGAAATGTGTTCATTGCATCAGACGACAATTTTACAAAGGAGGTGACAAAGCGACAAAGCTCGTATTTAGAGTGGCAGGACTGGAACTGGAGATCAGATGGAGATCTGATGCTGAATGGTGCTTACTTCACTCCTTCAGGACAAGAAAATCAGGAAATCTATGCAAAAGCATCGAGCATGGTTGCAAGGCCAGCTTCACTTTTAAACAGCTTTATTACCTCTGCTGGAGTTGTCAGTTGCAAGATAGGCAAACAATGCTAA

Network for GWHGAAZE002938

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00544.20	Pectate_lyase_4	133	315	1.00E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01728	pel	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Quorum sensing	map02024

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.778
	SRR3591706	second leaf	96.351
	SRR3591707	mature leaf	1.376
	SRR3591708	Shoot apex	50.017
	SRR3591709	Stem	4.880
	SRR3591710	White floral bud	14.489
	SRR3591711	White flower	3.418
	SRR3591712	Green floral bud	27.863
	SRR3591713	Yellow flower	0.877
SRP173429	SRR8316895	Juvenile bud stage	13.414
	SRR8316896	Juvenile bud stage	20.527
	SRR8316897	Juvenile bud stage	9.313
	SRR8316894	Third green stage	7.450
	SRR8316900	Third green stage	27.396
	SRR8316901	Third green stage	26.052
	SRR8316898	Complete white stage	2.910
	SRR8316899	Complete white stage	38.809
	SRR8316903	Complete white stage	4.324
	SRR8316902	Silver flowering stage	0.070
	SRR8316904	Silver flowering stage	0.159
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.108
	SRR8316907	Gold flowering stage	0.117
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	27.941
	SRR6706287	Light intensity 50%	30.949
	SRR6706288	Light intensity 20%	36.510
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.487
	CNS0095593	Slightly white alabastrum(diploid) 2	5.669
	CNS0095594	Slightly white alabastrum(diploid) 3	5.290
	CNS0095595	Whole white alabastrum(diploid) 2	4.974
	CNS0095596	Whole white alabastrum(diploid) 3	5.951
	CNS0095597	Whole white alabastrum(diploid) 4	6.175
	CNS0095598	Silvery flower (diploied) 1	3.206
	CNS0095599	Silvery flower (diploied) 2	1.022
	CNS0095600	Silvery flower (diploied) 3	0.155
	CNS0095601	Golden flower (diploid) 1	1.590
	CNS0095602	Golden flower (diploid) 2	0.496
	CNS0095603	Golden flower (diploid) 3	0.575
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.791
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.508
	CNS0095606	Slightly white alabastrum(tetraploid) 3	47.437
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.260
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.104
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.171
	CNS0095610	Silvery flower (diploied) 1	0.322
	CNS0095611	Silvery flower (diploied) 2	0.450
	CNS0095612	Silvery flower (diploied) 3	0.389
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	21.274
	CRR073298	Stem 2	18.068
	CRR073299	Stem 3	15.214
	CRR073300	Leaf 1	18.656
	CRR073301	Leaf 2	13.151
	CRR073302	Leaf 3	15.813
	CRR073303	Juvenile bud 1	10.407
	CRR073304	Juvenile bud 2	21.027
	CRR073305	Juvenile bud 3	10.083
	CRR073306	Third green 1	0.160
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.292
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.119
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.044
	CRR073315	Gold flowering 1	16.070
	CRR073316	Gold flowering 2	10.416
	CRR073317	Gold flowering 3	10.246
	CRR073318	Tawny withering 1	0.144
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.003