Gene detail

Detail information of GWHGAAZE003059

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009784518.1	PREDICTED: auxin response factor 16-like [Nicotiana sylvestris]
Swissprot	tr\|Q653H7\|ARFR_ORYSJ	Auxin response factor 18
trEMBL	tr\|M4QSA7\|M4QSA7_CAMSI	Auxin response factor {ECO:0000256\|RuleBase:RU004561}
TAIR10	AT4G30080.1	auxin response factor 16

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	91199681	91202953	+
GWHAAZE00000001	mRNA	91199681	91202953	+
GWHAAZE00000001	exon	91199681	91200781	+
GWHAAZE00000001	exon	91201338	91202242	+
GWHAAZE00000001	exon	91202884	91202953	+
GWHAAZE00000001	CDS	91199681	91200781	+
GWHAAZE00000001	CDS	91201338	91202242	+
GWHAAZE00000001	CDS	91202884	91202953	+

Transcript Sequence
>GWHTAAZE003063 ATGATCACAGTTATGAACAGTGTGAACAAACCCACGAATGAAGTGGAGAAATGTTTGGACTCCCAATTATGGCATGCCTGTGCCGGGGGAATGGTTCAAATGCCGCCGGTGAATTCTAAAGTCTTCTATTTCCCTCAGGGCCACGCCGAACACGCCCATGGCAAAGTAGATTTCGGTCACTTCCCTAGGGTTCCACCATTAATTTACTGCAGAGTATCCGCCATTAAATTTATGGCCGATACTGAGACCGACGAGGTCTATGCAAAGATAAAATTAGCTCCGTTGAAAAACAACAATGATTGTGATTTTGACGATGATGGTTTCATGGGTTTTGATAAGAATGAGGGCGGAGATAAACCGGCCTCTTTCGCCAAGACATTGACACAATCTGATGCTAACAATGGGGGAGGGTTTTCTGTGCCACGGTATTGTGCGGAGACTATATTTCCGCGGTTGGATTATTCGGCTGAGCCGCCAGTGCAGACCATTCTTGCAAAGGATGTTCATGGACAAGTGTGGAAATTTAGGCATATATATAGGGGTACGCCTCGCCGTCATCTTTTGACGACCGGGTGGAGTAATTTTGTGAATCACAAGAAACTTGTTGCCGGGGACTCGATAGTTTTCTTGAGGACTGAAAACGGGGATCTTTGCGTCGGTGTTCGGCGGGCAAAACGGGGTATCGGTGGCGGACTGGAGTCACCGTCAGGGTGGAACACAACACACGGGAATGGTGTATCATCTTTGTTTGGGGGATTATCCGGGTTCGTAAGAAATGGCAATGGGAAAGGAAACTTTAGTGGGGGTTTGAGGGGAACGGGGAAGCTGAGTGGTGAGTCTGTTGTTGAAGCTGCGAGTCTTGCGGCTAATGGGCAGCCATTTGAGGTTGTTTACTACCCGAGAGCGAGTACGCCTGAGTTTTGTGTTAAGGCGTCAACCGTGAGGGCTGCAATGAGAGTTCAGTGGTACTCGGGGATGAGGTTTAAGATGCCTTTCGAGACGGAGGATTCTTCTAGGATAAGCTGGTTTATGGGGACCATTTCCTCGGTTCAGATTGAGGATCCCATCAGTTGGCCTAATTCTCCATGGCGGCTTCTTCAGGTAGCATGGGATGAACCAGACTTGCTTCAGAACGTGAAAAGAGTCAGCCCGTGGTTGGTTGAGTTGGTATCGAACATTCCCACCATTCACCTTTCCCCGTTCTCGCCACCACGAAAGAAGTTGCGGGTCCCACAGCCCCCTGATTTTCCCCTTGTGGGGCAACTTCCTATGCCGTCTTTCCTCGGCAACCCCCTCAGACCCAATAGCCCCTTGTGTTGTATATCTGACAACATTCCTCAAGGCATACAGGGAGCCAGGCATGCTCATCAATTTGGGTTATCTTCATCAGATCTCCACTTCAACAATCTTCACTCGGATGTTTTACCTTTCGGTTACCAACACCTCGATTATGCTGCACGGCCTAATATAATCCCTACAGCCCCTTTCACCAACAACCTCGGTAATGACAAGAATGTATCTTGCTTGCTGACAATGGGAAATTCTACTCCAAGTTTGGAAAAAAATAATGCTAGTGATACAAAAGCACCTATGTTCTTGTTATTTGGTCAGCCCATTCTCACCGAACAGCAGCTGTCACAGAGCTGCTCTGGAGATACAGTTGGTAACAGCTCGTCAGATGGGAATCAAGAGAAGACTGCGAATCTATCTGACGGTTCAGGATCAGCTGTTCTTCAGAATGGTCCCACAGACTGCTCATCCGATGAAGGTTTTCCAAGGTATAAAGAACAGAGGCATGAGTTTGGATTGGAGGCGGGCCATTGCAAAGTGTTCATGGAGTCGGAGGACGTGGGCCGCACTCTCGACCTGTCGGTCCTTGGCTCCTACGAAGAATTGTACAGAAAGTTAGTCGACATGTTTGGGCTAGAAAGATCAGAGACGTTGACCAACGTGCTTTACCGGGACATGGCAGGTTCTGTTAAACACACCGGTGACGAGCCCTTCAGTGAGTTTCTGAAGACGGCACGAAGGTTGACGATTCTAATGGACTCAGGCAGTGACAACGTAGGAAGGTAG

Network for GWHGAAZE003059

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	123	224	1.80E-21
PF06507.14	Auxin_resp	284	367	2.90E-32

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3-ARF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0009725	biological_process	response to hormone
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.294
	SRR3591706	second leaf	6.980
	SRR3591707	mature leaf	4.901
	SRR3591708	Shoot apex	8.792
	SRR3591709	Stem	5.728
	SRR3591710	White floral bud	15.380
	SRR3591711	White flower	13.391
	SRR3591712	Green floral bud	8.839
	SRR3591713	Yellow flower	5.920
SRP173429	SRR8316895	Juvenile bud stage	3.616
	SRR8316896	Juvenile bud stage	3.287
	SRR8316897	Juvenile bud stage	2.068
	SRR8316894	Third green stage	1.942
	SRR8316900	Third green stage	4.586
	SRR8316901	Third green stage	5.552
	SRR8316898	Complete white stage	3.659
	SRR8316899	Complete white stage	8.408
	SRR8316903	Complete white stage	6.711
	SRR8316902	Silver flowering stage	1.327
	SRR8316904	Silver flowering stage	2.307
	SRR8316905	Silver flowering stage	1.171
	SRR8316906	Gold flowering stage	4.716
	SRR8316907	Gold flowering stage	3.061
	SRR8316908	Gold flowering stage	4.414
SRP132670	SRR6706286	Control	6.383
	SRR6706287	Light intensity 50%	7.354
	SRR6706288	Light intensity 20%	7.159
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.118
	CNS0095593	Slightly white alabastrum(diploid) 2	2.535
	CNS0095594	Slightly white alabastrum(diploid) 3	3.594
	CNS0095595	Whole white alabastrum(diploid) 2	3.057
	CNS0095596	Whole white alabastrum(diploid) 3	1.671
	CNS0095597	Whole white alabastrum(diploid) 4	2.406
	CNS0095598	Silvery flower (diploied) 1	6.150
	CNS0095599	Silvery flower (diploied) 2	5.214
	CNS0095600	Silvery flower (diploied) 3	7.567
	CNS0095601	Golden flower (diploid) 1	5.240
	CNS0095602	Golden flower (diploid) 2	6.251
	CNS0095603	Golden flower (diploid) 3	5.458
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.502
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.726
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.889
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.297
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.616
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.915
	CNS0095610	Silvery flower (diploied) 1	6.283
	CNS0095611	Silvery flower (diploied) 2	7.155
	CNS0095612	Silvery flower (diploied) 3	23.912
	CNS0095613	Golden flower (tetraploid) 1	5.922
	CNS0095614	Golden flower (tetraploid) 2	7.607
	CNS0095615	Golden flower (tetraploid) 3	8.410
CRA001975	CRR073297	Stem 1	8.501
	CRR073298	Stem 2	6.299
	CRR073299	Stem 3	8.769
	CRR073300	Leaf 1	9.376
	CRR073301	Leaf 2	8.099
	CRR073302	Leaf 3	6.344
	CRR073303	Juvenile bud 1	5.673
	CRR073304	Juvenile bud 2	5.675
	CRR073305	Juvenile bud 3	8.614
	CRR073306	Third green 1	10.009
	CRR073307	Third green 2	6.853
	CRR073308	Third green 3	10.264
	CRR073309	Second white 1	13.799
	CRR073310	Second white 2	15.032
	CRR073311	Second white 3	16.251
	CRR073312	Silver flowering 1	14.454
	CRR073313	Silver flowering 2	13.737
	CRR073314	Silver flowering 3	10.150
	CRR073315	Gold flowering 1	3.201
	CRR073316	Gold flowering 2	3.741
	CRR073317	Gold flowering 3	3.258
	CRR073318	Tawny withering 1	4.679
	CRR073319	Tawny withering 2	4.149
	CRR073320	Tawny withering 3	5.405