Gene detail

Detail information of GWHGAAZE003070

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002316363.1	4.05764E-63	hypothetical protein POPTR_0010s22880g [Populus trichocarpa]
Swissprot	tr\|Q9SP55\|VATG_CITLI	2E-55	V-type proton ATPase subunit G
trEMBL	tr\|B9HUE7\|B9HUE7_POPTR	2E-63	Vacuolar ATP synthase subunit G 2 family protein {ECO:0000313\|EMBL:ERP56561.1}
TAIR10	AT3G01390.2	3E-37	vacuolar membrane ATPase 10

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	91430780	91433818	+
GWHAAZE00000001	mRNA	91430780	91433818	+
GWHAAZE00000001	exon	91430780	91430867	+
GWHAAZE00000001	exon	91431660	91431760	+
GWHAAZE00000001	exon	91433404	91433818	+
GWHAAZE00000001	CDS	91430780	91430867	+
GWHAAZE00000001	CDS	91431660	91431760	+
GWHAAZE00000001	CDS	91433404	91433547	+
GWHAAZE00000001	three_prime_UTR	91433548	91433818	+

Transcript Sequence
>GWHTAAZE003074 ATGGAAGCCAACAGGGGCCAGAATGGAATTCAACTCTTGTTAACTGCAGAGCAAGAAGCTCAGCACATTGTCAATGCTGCTAGAAACGCAAAAATGGCTAGACTAAAACAGGCAAAAGAAGAGGCTGAAAAAGAGGTTGCTGCGTTCCGTGCTCAAATGGAATCGGAGTTTCAGAGAAAGGTTGCAGAGAGTAGTGGAGACTCGGGTGCTAATGTGAAGCGTCTAGAAAAAGAAACTGAAGCAAAGATCGATCACTTGAAGACAGAAGCTTCAAGAATTTCCCATGATGTGGTCCAGATGCTTCTGAAGCACGTTACTACTGTAAAGAACTGAAAATGCTTTGAGGTTTGGAAGGTCTTGGTGCGATCTTTTCTGTTTTTGCTTAGTATGACTTTATCCGGTTGGAATGATAAGATATGCGTATTTAATTTGTATCTTTGTCTATTTATCGTATTGGTTTATTGTGGCTCTTGATTGAATAAAACAAATTAATATTTGCTTCTTGTGTATTATTGCTAAATTTTGTTAGGAGAGACATGAACTCCATTATGTTTATTGAAGAACCTGTTACAAGTAGTATGGTATTTCAACTCCATTATGTTTA

Network for GWHGAAZE003070

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03179.16	V-ATPase_G	6	109	4.60E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02152	ATPeV1G, ATP6G	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		mTOR signaling pathway	map04150
		Phagosome	map04145
		Collecting duct acid secretion	map04966
		Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name
GO:1902600	biological_process	proton transmembrane transport
GO:0016471	cellular_component	vacuolar proton-transporting V-type ATPase complex
GO:0042626	molecular_function	ATPase-coupled transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	332.619
	SRR3591706	second leaf	230.649
	SRR3591707	mature leaf	112.689
	SRR3591708	Shoot apex	238.077
	SRR3591709	Stem	210.117
	SRR3591710	White floral bud	185.582
	SRR3591711	White flower	167.358
	SRR3591712	Green floral bud	210.567
	SRR3591713	Yellow flower	190.577
SRP173429	SRR8316895	Juvenile bud stage	128.846
	SRR8316896	Juvenile bud stage	162.386
	SRR8316897	Juvenile bud stage	91.904
	SRR8316894	Third green stage	78.405
	SRR8316900	Third green stage	266.829
	SRR8316901	Third green stage	252.734
	SRR8316898	Complete white stage	108.893
	SRR8316899	Complete white stage	294.097
	SRR8316903	Complete white stage	191.977
	SRR8316902	Silver flowering stage	122.004
	SRR8316904	Silver flowering stage	170.841
	SRR8316905	Silver flowering stage	98.222
	SRR8316906	Gold flowering stage	227.487
	SRR8316907	Gold flowering stage	236.453
	SRR8316908	Gold flowering stage	228.862
SRP132670	SRR6706286	Control	162.719
	SRR6706287	Light intensity 50%	174.774
	SRR6706288	Light intensity 20%	196.456
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	245.961
	CNS0095593	Slightly white alabastrum(diploid) 2	315.073
	CNS0095594	Slightly white alabastrum(diploid) 3	223.073
	CNS0095595	Whole white alabastrum(diploid) 2	254.034
	CNS0095596	Whole white alabastrum(diploid) 3	249.491
	CNS0095597	Whole white alabastrum(diploid) 4	259.373
	CNS0095598	Silvery flower (diploied) 1	212.784
	CNS0095599	Silvery flower (diploied) 2	239.060
	CNS0095600	Silvery flower (diploied) 3	195.052
	CNS0095601	Golden flower (diploid) 1	193.517
	CNS0095602	Golden flower (diploid) 2	166.149
	CNS0095603	Golden flower (diploid) 3	152.750
	CNS0095604	Slightly white alabastrum(tetraploid) 1	247.711
	CNS0095605	Slightly white alabastrum(tetraploid) 2	250.854
	CNS0095606	Slightly white alabastrum(tetraploid) 3	346.197
	CNS0095607	Whole white alabastrum(tetraploid) 1	164.702
	CNS0095608	Whole white alabastrum(tetraploid) 2	199.971
	CNS0095609	Whole white alabastrum(tetraploid) 3	231.671
	CNS0095610	Silvery flower (diploied) 1	240.430
	CNS0095611	Silvery flower (diploied) 2	226.790
	CNS0095612	Silvery flower (diploied) 3	235.908
	CNS0095613	Golden flower (tetraploid) 1	227.277
	CNS0095614	Golden flower (tetraploid) 2	217.291
	CNS0095615	Golden flower (tetraploid) 3	193.760
CRA001975	CRR073297	Stem 1	137.472
	CRR073298	Stem 2	147.622
	CRR073299	Stem 3	148.302
	CRR073300	Leaf 1	166.707
	CRR073301	Leaf 2	162.179
	CRR073302	Leaf 3	210.726
	CRR073303	Juvenile bud 1	198.365
	CRR073304	Juvenile bud 2	164.272
	CRR073305	Juvenile bud 3	92.420
	CRR073306	Third green 1	131.700
	CRR073307	Third green 2	173.759
	CRR073308	Third green 3	142.872
	CRR073309	Second white 1	123.915
	CRR073310	Second white 2	120.500
	CRR073311	Second white 3	71.653
	CRR073312	Silver flowering 1	63.011
	CRR073313	Silver flowering 2	72.779
	CRR073314	Silver flowering 3	68.037
	CRR073315	Gold flowering 1	127.378
	CRR073316	Gold flowering 2	134.471
	CRR073317	Gold flowering 3	86.270
	CRR073318	Tawny withering 1	130.633
	CRR073319	Tawny withering 2	140.992
	CRR073320	Tawny withering 3	138.188