Gene detail

Detail information of GWHGAAZE003076

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011040980.1	0	PREDICTED: serine/threonine-protein kinase-like protein CCR2 [Populus euphratica]
COG	YP_001958461.1	6E-18	hypothetical protein Aasi_1443
Swissprot	tr\|Q9S7D9\|ACCR1_ARATH	0	Serine/threonine-protein kinase-like protein CCR1 (Precursor)
trEMBL	tr\|B9HUE1\|B9HUE1_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:EEF01470.2}
TAIR10	AT3G09780.1	0	CRINKLY4 related 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	91559049	91561283	-
GWHAAZE00000001	mRNA	91559049	91561283	-
GWHAAZE00000001	exon	91559049	91561283	-
GWHAAZE00000001	CDS	91559049	91561283	-

Transcript Sequence
>GWHTAAZE003080 ATGGCCATCCCAGCTTCTGGGTACGGGTCAACGGGCCCTATCGCCGCTGCATTTGGTGAAAACGGCTTCTTTTGCGCCATTGATGCCAGTGGCAAGCAAGAGATCATATGTTGGGGGAAGAACAATAACCAATCATCATCCGCATCAGCGTCCCCGCATGTTAATTATCTGCCTGCCATGTCTGCTCTCTCGGGCGGTGAGGGATTTCTCTGCGGCATTACGTCAAACACGTCACAGGCATATTGTTGGACACTGCCTAGTTCAGGTACAGATCTCGTCCCACCGACCTTAATGTACAATACTTACTCACAAATCGCTGCTGGATTGGATCATGTGTGCGCTATTAGAGGATCTTTTTATTCAAGTATCGATTATGGCGCTGTAGATTGTTGGGAATTTAATCAAACAGAATTTCTTAGTTATAATTCTTCATTTCAACACCCATCTGTAAATAATGTTGTATTTGGGGAGATAGTTTCTGGCGATGGTTTTACTTGTGGTGCTATGAGAGATGCTGGTGTTGTTTGTTGGGGTCCTAAATCTGGCAATTTAGGGGAATCTCAACTTTCCAAGAATATTACTACCTTAGTTTCTGGTAGAGATTCTGTCTGTGGGATTTCTAGTGAATCTGGTGAAGTACAATGCTGGGGTGATGCTAAAGAATTCGGCAATCCTCCGTTTGGTATTCGTTTTGTGGCCTTATCAGCTGGTACCCGTCATTTTTGTGGGATTCGCGAGGATGATCATGGTATTGAATGCTGGGGAAGCGTAAATGCTTCATCAATCCCAAAGGGTTCTGGATTTACAGCCATTGCTTCTTCCGATTATACTTCCTGTGGTGTTAGAGAAGCCGATTTCGTTCTTGATTGCTTTGATGTTCGTGGGCAGTCCCCTCCGAATTATAGGCCGCCTCTGCAGTTATGCAGTCCAGGTGTTTGCTCTCCGGGCTTGTGTTCTAGTGGGAAGTTTGCATTCAATGCAAGTATCCTTGACGAGCCCGAACTTACAAGCTTGTGTGTGCCAAAGGACCTAAAGATGTGCTTGCCGTGTGGGTCGAATTGCTCTGAAGGATTTTTCCCATCAAGTGTATGTAGTGAGAATGCAGACCGAATATGCACCGAGTGTTCTCTTTGCCAGAGTAGCTCTTGTGAGGATGTTTGTAGGCTTCATTCTTCGTCCGATATTCGACTTCAAGAGCAGCGAGAGATAAAGAAATTACTAATCATTGTTGGGTCCTCAGTATCGGGTTTGATGCTTGTTCTTATCGGGTGGTGTATTATTCCTCGTTTGAATGGAACAGGTAATGAGGACGGGAATAAAACCCGGATAAGTTCTTGCGTACGCAAACAGGTGGTTGAGGCCGAGCCTAACCCGGACCTTGAGCACGCTCTCTCTATAACCTCTTGTGTCGGAACAGCACAAGTCTTTCGTCTATTGGATCTAAAAGACGCTACAAATGGATTTAAAGAGTTTAATGAGCTAGGCCGAGGAAGCTATGGATTTGTCTACAAAGCCTCTCTTGCTGATGGTAGCCAAGTGGCAGTCAAAAGGGCAAATGCCGCCACTATAATTCACACCAATAGCCGAGAATTCGAAGCCGAACTCGAAATACTTTGCAATCTTCGGCATGGGAATATAGTGAACTTGTTGGGCTATTGTGCCGAAATGGGGGAGAGGCTTCTGGTTTACGAGTTAATGCCACATGGCACGCTCCATGACCATCTCCATGGGGACCTTTCACCGTTGGATTGGAATCTGAGGTTGAAGATATCTTTGCAAGCTGCAAGGGGGCTCGAGTACCTTCACAAAGTAGCCAACCCTCCCATTGTTCACCGGGACGTTAAAACTTCAAACATTCTTTTGGATTCGAATTGGGATGCAAGAATAGCAGACTTTGGGCTATTGAGCGTCAGTGAAAGGGAGGTACATGGAGATATGGAGAGTGATGTGTACAATTACGGCATTGTTTTGCTAGAGATTTTGAGCTGTAGAAAAGACTACGACAGGGATTATACGCCATCGGGCATTGTCGAGTGGGCATTGCCTATAATAAGACGGGGCAGAGCAGCTGCCATTGTCGATAGGCATTTGGCTTTGCCAAGAAATGTGGAGCCATTGCTCAAGCTTGCTGATATAGCTGAGCTTTGTTTGAGGGAAAATCCCAATGAACGCGCCGATATATCTGATGTGGTCGCTTCGTTGGATCAGATAGTGGCGACTGGATTGACATTCTAG

Network for GWHGAAZE003076

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	492	637	5.70E-32

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CR4L

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.016
	SRR3591706	second leaf	0.338
	SRR3591707	mature leaf	0.253
	SRR3591708	Shoot apex	0.367
	SRR3591709	Stem	4.449
	SRR3591710	White floral bud	1.489
	SRR3591711	White flower	0.252
	SRR3591712	Green floral bud	1.169
	SRR3591713	Yellow flower	0.046
SRP173429	SRR8316895	Juvenile bud stage	0.125
	SRR8316896	Juvenile bud stage	0.172
	SRR8316897	Juvenile bud stage	0.024
	SRR8316894	Third green stage	0.168
	SRR8316900	Third green stage	0.780
	SRR8316901	Third green stage	0.554
	SRR8316898	Complete white stage	0.908
	SRR8316899	Complete white stage	2.135
	SRR8316903	Complete white stage	3.177
	SRR8316902	Silver flowering stage	0.276
	SRR8316904	Silver flowering stage	0.630
	SRR8316905	Silver flowering stage	0.048
	SRR8316906	Gold flowering stage	0.144
	SRR8316907	Gold flowering stage	0.070
	SRR8316908	Gold flowering stage	0.045
SRP132670	SRR6706286	Control	0.750
	SRR6706287	Light intensity 50%	0.860
	SRR6706288	Light intensity 20%	0.942
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.081
	CNS0095593	Slightly white alabastrum(diploid) 2	0.420
	CNS0095594	Slightly white alabastrum(diploid) 3	0.257
	CNS0095595	Whole white alabastrum(diploid) 2	0.123
	CNS0095596	Whole white alabastrum(diploid) 3	0.103
	CNS0095597	Whole white alabastrum(diploid) 4	0.337
	CNS0095598	Silvery flower (diploied) 1	0.089
	CNS0095599	Silvery flower (diploied) 2	0.145
	CNS0095600	Silvery flower (diploied) 3	0.593
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.073
	CNS0095603	Golden flower (diploid) 3	0.195
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.262
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.261
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.452
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.103
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.073
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.247
	CNS0095610	Silvery flower (diploied) 1	0.267
	CNS0095611	Silvery flower (diploied) 2	0.025
	CNS0095612	Silvery flower (diploied) 3	0.381
	CNS0095613	Golden flower (tetraploid) 1	0.185
	CNS0095614	Golden flower (tetraploid) 2	0.287
	CNS0095615	Golden flower (tetraploid) 3	0.127
CRA001975	CRR073297	Stem 1	0.298
	CRR073298	Stem 2	0.330
	CRR073299	Stem 3	0.536
	CRR073300	Leaf 1	1.406
	CRR073301	Leaf 2	0.759
	CRR073302	Leaf 3	0.873
	CRR073303	Juvenile bud 1	1.235
	CRR073304	Juvenile bud 2	1.035
	CRR073305	Juvenile bud 3	0.952
	CRR073306	Third green 1	0.037
	CRR073307	Third green 2	0.321
	CRR073308	Third green 3	0.229
	CRR073309	Second white 1	0.012
	CRR073310	Second white 2	0.105
	CRR073311	Second white 3	0.371
	CRR073312	Silver flowering 1	0.002
	CRR073313	Silver flowering 2	0.015
	CRR073314	Silver flowering 3	0.003
	CRR073315	Gold flowering 1	0.231
	CRR073316	Gold flowering 2	0.879
	CRR073317	Gold flowering 3	0.861
	CRR073318	Tawny withering 1	0.258
	CRR073319	Tawny withering 2	0.391
	CRR073320	Tawny withering 3	0.118