Gene detail

Detail information of GWHGAAZE003083

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI31479.3	1.03E-147	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q9ZQF9\|MBR1_ARATH	4E-36	E3 ubiquitin-protein ligase MBR1
trEMBL	tr\|F6HNH7\|F6HNH7_VITVI	2E-148	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB56196.1}
TAIR10	AT2G37150.2	1E-35	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	91802287	91806151	+
GWHAAZE00000001	mRNA	91802287	91806151	+
GWHAAZE00000001	exon	91802287	91802346	+
GWHAAZE00000001	exon	91802619	91802718	+
GWHAAZE00000001	exon	91803219	91803968	+
GWHAAZE00000001	exon	91804257	91804657	+
GWHAAZE00000001	exon	91805217	91805318	+
GWHAAZE00000001	exon	91805401	91805538	+
GWHAAZE00000001	exon	91806014	91806151	+
GWHAAZE00000001	CDS	91802287	91802346	+
GWHAAZE00000001	CDS	91802619	91802718	+
GWHAAZE00000001	CDS	91803219	91803968	+
GWHAAZE00000001	CDS	91804257	91804657	+
GWHAAZE00000001	CDS	91805217	91805318	+
GWHAAZE00000001	CDS	91805401	91805538	+
GWHAAZE00000001	CDS	91806014	91806151	+

Transcript Sequence
>GWHTAAZE003089 ATGCATCTCAAGCGATCTGAATCTGCAGTTGTGGAAGATGGCACTTCAAAATATGAAGTGGAGATCATGGGGCATAGACACTTTACTAACACATTCGATATGTTTGGGATCAACCAAGGCCACAACCATTCATCTGCAGAGCAGTCCTACGCTCCTCTGGGAGGAGCTGTTCCTTCCGAAAACGTATCTTTTGTTTCTCCAATGGATAATATGTCAAGGAGTGGAGGAAACTGTGATGATCATTGGAATTCAGAAGGCAGAGCAAATGAGTATTCTTCCTCAAATTTCAGCATGCAAGTACAACATATGCCACCACCCTTTTCCACCCGGCCGTATGATCCCTACCCACACTCATCAGTTTCTAGAAACTTATATCCGGCCCAACCAATTAATGTCCCCCTTGTTCATTCTAGTTACTACAACAGGCCCACTACTCATAATGTTGAGGTTGGTTTACTAGATCCTACGACCGCTACTGTAAGGGGAGCATATAAAAGAAAAGGCCCTAGTTTTAATGGAGCTTGTGAGAGAGGCGGTACAAACAGATTTTCTGGTGCAGGAAGTTCCTCCAGTTCTCAGTTGCTGCTCGAAAATCCAACTTCTGATTATCAAAGCATCCCTCTTCCAGGTCCTATTGGTCTAGCAGCTCAATATGGGGGCAGTAGTAGCCTCTCGGTTCCCGGTGAAGATTCGATGAGGAATGTAAGAAGCCGATCTGGACTATATATTGAACCCAACACTATGAGAACTCATCTACCTACCTATCCTTCTCATCATTACCATTCAACAACACTCCCAAGAAACCCATCTAACATGGTAAGTCTTGGCAATTTGAGTGCTGATGTCACCAGTCGAGAATGGATCCATGTTCCTCTTTCTGCTACCTCTCATGGAAGACTCCCAACTTCTGATACTAATGGCTCAAGCTATGAGACAAATCGGTTTGTTGTTGGAGGAAGTACTGAAGACATTGGTAGCTGCCCCCGTGATTACATTTCAAGCGGACGTCCTGTTTCTTCTTCACGGTATCTTCATGGTCCTCATGCTCAGGCTACAAGGGAAGGCAGCAATTATCATGCTCTTAGAGCTACTCCTTCGTACAGGACCACCAGTTTAAGCTACTCACACTTGGGACACGAAGCTGCTGCATCTATCGACAATGATCTGCATTCACATTCTGAAAGTTTCTCTTCTAGATACTCGAGGACGGCATCTGCCGGAGGACTGCGCAACAGTTACAGGAATGGAAGGTCAAGAATAGCTGTCAACAGACTTCAATCAATTTCTAGTGTGGTGTATGCGAGTTCAGAGTTTCTGATGGCAGGGGATCGTTCACCTATCTATGATGGTTCTAGAGCTTCATATGATCAGTACAGGGACATGAGGCTAGATGTTGACAGCATGAGTTACGAGGAACTTCTTGCTCTTGGGGAAAGGATTGGGGATGTAAGCACGGGTGTGTCTGAAGATTTGATGTCTAACTGTTTGGTAGAGAAAGTATACTGCTGTTCAGATCAAAACCACGTGGAAGAGAACTGTGCTATATGCCTTGAAGAGTACAAAGCTGGGGAGGAAATTGGGACATTAAAGAACTGTGGACATGGTTACCATGTGGGATGCATCAGGAAGTGGTTGATGATGAAGAATGTTTGCCCAATTTGCAAGGCTGATGCTCTTAAAGACTGTTAA

Network for GWHGAAZE003083

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.7	zf-RING_2	512	555	7.20E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.944
	SRR3591706	second leaf	7.317
	SRR3591707	mature leaf	10.296
	SRR3591708	Shoot apex	10.965
	SRR3591709	Stem	17.841
	SRR3591710	White floral bud	22.744
	SRR3591711	White flower	18.937
	SRR3591712	Green floral bud	19.149
	SRR3591713	Yellow flower	19.975
SRP173429	SRR8316895	Juvenile bud stage	22.901
	SRR8316896	Juvenile bud stage	34.949
	SRR8316897	Juvenile bud stage	15.726
	SRR8316894	Third green stage	14.907
	SRR8316900	Third green stage	31.991
	SRR8316901	Third green stage	35.093
	SRR8316898	Complete white stage	9.623
	SRR8316899	Complete white stage	35.870
	SRR8316903	Complete white stage	23.374
	SRR8316902	Silver flowering stage	13.600
	SRR8316904	Silver flowering stage	16.524
	SRR8316905	Silver flowering stage	7.959
	SRR8316906	Gold flowering stage	35.596
	SRR8316907	Gold flowering stage	39.559
	SRR8316908	Gold flowering stage	33.557
SRP132670	SRR6706286	Control	28.840
	SRR6706287	Light intensity 50%	28.262
	SRR6706288	Light intensity 20%	26.836
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	32.636
	CNS0095593	Slightly white alabastrum(diploid) 2	27.924
	CNS0095594	Slightly white alabastrum(diploid) 3	28.089
	CNS0095595	Whole white alabastrum(diploid) 2	24.729
	CNS0095596	Whole white alabastrum(diploid) 3	22.192
	CNS0095597	Whole white alabastrum(diploid) 4	23.087
	CNS0095598	Silvery flower (diploied) 1	21.704
	CNS0095599	Silvery flower (diploied) 2	26.736
	CNS0095600	Silvery flower (diploied) 3	18.954
	CNS0095601	Golden flower (diploid) 1	29.578
	CNS0095602	Golden flower (diploid) 2	23.652
	CNS0095603	Golden flower (diploid) 3	23.630
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.599
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.009
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.417
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.880
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.781
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.639
	CNS0095610	Silvery flower (diploied) 1	23.008
	CNS0095611	Silvery flower (diploied) 2	16.023
	CNS0095612	Silvery flower (diploied) 3	25.880
	CNS0095613	Golden flower (tetraploid) 1	16.432
	CNS0095614	Golden flower (tetraploid) 2	17.689
	CNS0095615	Golden flower (tetraploid) 3	23.462
CRA001975	CRR073297	Stem 1	38.262
	CRR073298	Stem 2	33.390
	CRR073299	Stem 3	15.566
	CRR073300	Leaf 1	42.457
	CRR073301	Leaf 2	43.517
	CRR073302	Leaf 3	14.314
	CRR073303	Juvenile bud 1	14.443
	CRR073304	Juvenile bud 2	10.894
	CRR073305	Juvenile bud 3	19.659
	CRR073306	Third green 1	9.622
	CRR073307	Third green 2	7.377
	CRR073308	Third green 3	7.897
	CRR073309	Second white 1	5.671
	CRR073310	Second white 2	6.847
	CRR073311	Second white 3	5.550
	CRR073312	Silver flowering 1	7.131
	CRR073313	Silver flowering 2	6.252
	CRR073314	Silver flowering 3	5.905
	CRR073315	Gold flowering 1	3.856
	CRR073316	Gold flowering 2	6.387
	CRR073317	Gold flowering 3	1.979
	CRR073318	Tawny withering 1	11.683
	CRR073319	Tawny withering 2	11.887
	CRR073320	Tawny withering 3	11.188