Gene detail

Detail information of GWHGAAZE003163

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002276028.1	0	PREDICTED: 3-ketoacyl-CoA synthase 12-like [Vitis vinifera]
COG	YP_003396763.1	9E-17	chalcone and stilbene synthase domain-containing protein
Swissprot	tr\|Q9SIB2\|KCS12_ARATH	0	3-ketoacyl-CoA synthase 12 (Precursor)
trEMBL	tr\|A0A022RIH9\|A0A022RIH9_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU39553.1} (Fragment)
TAIR10	AT2G28630.1	2E-155	3-ketoacyl-CoA synthase 12

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	93052012	93053268	-
GWHAAZE00000001	mRNA	93052012	93053268	-
GWHAAZE00000001	exon	93052012	93053268	-
GWHAAZE00000001	CDS	93052012	93053268	-

Transcript Sequence
>GWHTAAZE003169 ATGCACTACGAGTGCTTCAAGCCTTCAAATGACCGGAAACTCACGACCGAATTCTCTGGCGACATCATTATGCGCAACAAAAACCTCGGCAACGAGCAGTACAAGTTCCTCTTGCGTGCCATTGTCAACTCCGGCCTCGGCGAGGAAACTTACGGACCGAGAAACATCATCACCGGCCGTGAAGAATCTCCGACCATCGCTGACGGAATCTCAGAGATGGACGAATTCTTCATCAGCACACTCGACAATCTCTTTCACAAAAGTGGAGTCTCGCCACGAGAAATCGATATACTCGTTGTGAATGTATCAATGCTTGCTTCGGTCCCTTCATTAACATCTCGAATAGTCAATCATTACAAGATGAGAGAAGACATTAAAGCGTTTAATCTCTCTGGTATGGGATGTAGTGCTAGCATCATATCGATTGATATAGTTCGAAACATTTTCAAAACTTGCAAAAATTCATTCGCGATTGTTTTGACCTCGGAATCAATAGCTCCAAATTGGTACACTGGCAGCGAGAAATCAATGATTCTCACCAACTGCTTGTTCCGATCCGGTGGATGTTCCATTTTACTCACGAACAACAAAGCAATGAAAAAACGATCCGCATTTAGTTTAAAGTGTTTGATTAGAACACATTTGGGGGCAATGGACGAAGCGCATAGCTGCTGCAAGCAGCAGGAGGATGACCATGGTCGCCTAGGGTTTTTCCTCAGTAAGAGCCTTACGAAGTCAGCCTCAAAAGCCTTTGCCGAGAACCTAAGAGATCTAGCCCCAAGGGTGTTGCCGCTTGGAGAGCTCGTTCGCTACATTTTGTTAAGTAGTGTGACAAATTTTGTTCAACGCTACTCTAAAGTGAGTAAAAAAGTGAGTTTGAATTTCAAAACTGGTGTGGATCATTTTTGCCTGCATCCAGGTGGGACCGCTGTGATCGATGGGATAAGGAAGAGCTTGGAGCTGAGCGAGAAAGACGTGGAGCCGTCGAGAATGACACTGCATAGATTTGGGAACACGTCAGCGAGTAGTTTGTGGTACGTGTTGGGGTACATGGAAGCGAAGAATAGGTTGAAGAAAGGCGATAGGGTTTTGATGATAGGTTTTGGATCTGGTTTTAAGTGTAATAGTTGTTTGTGGGAGGTTCTTAGGGATTTGGGTGGTGGTAACGTTTGGGGGGATTCTATTGGTAATTACCCTCCAAAAACACTAGTGAATCCTTATTTGGAGAAGTTCGGTTGGGTTTATGAAGACAACTAG

Network for GWHGAAZE003163

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08392.13	FAE1_CUT1_RppA	2	273	1.10E-109
PF08541.11	ACP_syn_III_C	299	380	2.20E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15397	KCS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fatty acid elongation	map00062
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0016020	cellular_component	membrane
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.656
	SRR3591706	second leaf	3.904
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	8.980
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.118
	SRR3591712	Green floral bud	0.494
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.981
	SRR8316896	Juvenile bud stage	1.703
	SRR8316897	Juvenile bud stage	0.353
	SRR8316894	Third green stage	0.359
	SRR8316900	Third green stage	0.049
	SRR8316901	Third green stage	0.250
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.041
	SRR6706287	Light intensity 50%	0.034
	SRR6706288	Light intensity 20%	0.026
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.238
	CNS0095593	Slightly white alabastrum(diploid) 2	0.427
	CNS0095594	Slightly white alabastrum(diploid) 3	0.266
	CNS0095595	Whole white alabastrum(diploid) 2	0.073
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.018
	CNS0095599	Silvery flower (diploied) 2	0.338
	CNS0095600	Silvery flower (diploied) 3	0.001
	CNS0095601	Golden flower (diploid) 1	0.139
	CNS0095602	Golden flower (diploid) 2	0.117
	CNS0095603	Golden flower (diploid) 3	0.002
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.042
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.106
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.214
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (diploied) 1	0.004
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.152
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	2.085
	CRR073298	Stem 2	1.096
	CRR073299	Stem 3	1.366
	CRR073300	Leaf 1	0.252
	CRR073301	Leaf 2	0.140
	CRR073302	Leaf 3	0.110
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.030
	CRR073305	Juvenile bud 3	0.104
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.129
	CRR073316	Gold flowering 2	0.054
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000