Gene detail

Detail information of GWHGAAZE003164

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP19957.1	0	unnamed protein product [Coffea canephora]
COG	YP_003976318.1	2E-41	pectate lyase family protein
Swissprot	tr\|Q9FM66\|PLY21_ARATH	1E-54	Putative pectate lyase 21 (Precursor)
trEMBL	tr\|A0A068VH79\|A0A068VH79_COFCA	0	Pectate lyase {ECO:0000256\|RuleBase:RU361123}
TAIR10	AT3G55140.1	1E-170	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	93073675	93077265	+
GWHAAZE00000001	mRNA	93073675	93077265	+
GWHAAZE00000001	exon	93073675	93073867	+
GWHAAZE00000001	exon	93074641	93074992	+
GWHAAZE00000001	exon	93075355	93075565	+
GWHAAZE00000001	exon	93075701	93075769	+
GWHAAZE00000001	exon	93077017	93077265	+
GWHAAZE00000001	CDS	93073675	93073867	+
GWHAAZE00000001	CDS	93074641	93074992	+
GWHAAZE00000001	CDS	93075355	93075565	+
GWHAAZE00000001	CDS	93075701	93075769	+
GWHAAZE00000001	CDS	93077017	93077265	+

Transcript Sequence
>GWHTAAZE003170 CCAAATCCGCCATTATCGACTCTCAACAGTACAATCAGAGCTAACCGTATACCGCACTGCTTTCCCATGACGACGTTACCGTACGCCGATGTCGATTTCAGCTTGCGAGCTCTCGCCGGTCGGGCAGAGGGTTTCGGTCGCTTCTCCCTCGGTGGCCTCCACGGCTCTCTCTATTTCGTCACCTCGTTAGCTGATGATGGGCCAGGATCACTCCGTGATGGATGTCGTAGAAAAGAACCACTCTGGATTGTCTTTGAAATTTCAGGCACCATTCATCTTTCATCCTACTTGAGTGTCTCATCTTACAAAACAATTGATGGCCGTGGCCAACGGATAAAACTAACAGGCAAAGGATTAAGATTGAAGGAGTGTGAACACATAATTGTATGCAACCTTGAGTTTGAAGGTGGTAGAGGACATGATGTTGATGGCATTCAAATAAAACCTAATTCTAGGCACATATGGATAGATCGTTGTAGCCTTCGTGATTATGATGACGGGCTTATAGACATAACAAGACAAAGCACAGATATTACCATTTCTCGATGTTATTTTGCTCAACATGACAAGACGATGCTTATTGGAGCCGACCCATCTCATGTTGGTGACAGATGCATTAGAGTGACCATTCATCATTGTTTTTTTGATGGGACACGGCAGAGACAACCTCGTGTGAGATTTGGAAAAGTTCATCTGTACAATAACTATACTAGAAATTGGGGTATATATGCGGTTTGTGCAAGCGTGGAATCTCAGATATACTCTCAGTGCAACATTTATGAAGCTGGACACAAGAAGAAAACTTTTGAATATTACACGGAAAAGGCAGCTGATAAGGAGGAGCCAAGATCTGGATTGATAAGGTCCGAAGGGGACTTGTTCCTGAACGGAGCTCAAGCATCCTTATTAACAGGAATCAGTGAAGAAAACATTTTCCATCCAAGTGAATTTTACCCAATATGGACGCTAGAGACTGCCTCAGATTCCTTGCAGAGTGTTCTTCAAATCTGTGCAGGTTGGCAATCTATTCCGAGGCCAGCGGAACGAAACATTGAATGCATAGCAAATGCATGA

Network for GWHGAAZE003164

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00544.20	Pectate_lyase_4	96	259	2.30E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01728	pel	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Quorum sensing	map02024

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.679
	SRR3591706	second leaf	3.075
	SRR3591707	mature leaf	5.156
	SRR3591708	Shoot apex	5.945
	SRR3591709	Stem	8.912
	SRR3591710	White floral bud	17.056
	SRR3591711	White flower	17.108
	SRR3591712	Green floral bud	19.163
	SRR3591713	Yellow flower	14.336
SRP173429	SRR8316895	Juvenile bud stage	12.797
	SRR8316896	Juvenile bud stage	22.302
	SRR8316897	Juvenile bud stage	9.646
	SRR8316894	Third green stage	9.483
	SRR8316900	Third green stage	34.580
	SRR8316901	Third green stage	29.793
	SRR8316898	Complete white stage	9.003
	SRR8316899	Complete white stage	23.613
	SRR8316903	Complete white stage	11.290
	SRR8316902	Silver flowering stage	8.840
	SRR8316904	Silver flowering stage	11.622
	SRR8316905	Silver flowering stage	5.577
	SRR8316906	Gold flowering stage	18.882
	SRR8316907	Gold flowering stage	17.550
	SRR8316908	Gold flowering stage	21.206
SRP132670	SRR6706286	Control	21.101
	SRR6706287	Light intensity 50%	19.684
	SRR6706288	Light intensity 20%	19.785
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.044
	CNS0095593	Slightly white alabastrum(diploid) 2	15.713
	CNS0095594	Slightly white alabastrum(diploid) 3	19.083
	CNS0095595	Whole white alabastrum(diploid) 2	23.104
	CNS0095596	Whole white alabastrum(diploid) 3	27.977
	CNS0095597	Whole white alabastrum(diploid) 4	26.761
	CNS0095598	Silvery flower (diploied) 1	9.364
	CNS0095599	Silvery flower (diploied) 2	10.472
	CNS0095600	Silvery flower (diploied) 3	17.317
	CNS0095601	Golden flower (diploid) 1	9.973
	CNS0095602	Golden flower (diploid) 2	14.157
	CNS0095603	Golden flower (diploid) 3	14.831
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.595
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.528
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.295
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.716
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.813
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.992
	CNS0095610	Silvery flower (diploied) 1	14.182
	CNS0095611	Silvery flower (diploied) 2	15.203
	CNS0095612	Silvery flower (diploied) 3	16.118
	CNS0095613	Golden flower (tetraploid) 1	9.229
	CNS0095614	Golden flower (tetraploid) 2	13.732
	CNS0095615	Golden flower (tetraploid) 3	15.063
CRA001975	CRR073297	Stem 1	9.420
	CRR073298	Stem 2	10.312
	CRR073299	Stem 3	11.555
	CRR073300	Leaf 1	12.903
	CRR073301	Leaf 2	14.391
	CRR073302	Leaf 3	12.641
	CRR073303	Juvenile bud 1	15.796
	CRR073304	Juvenile bud 2	13.698
	CRR073305	Juvenile bud 3	8.773
	CRR073306	Third green 1	7.221
	CRR073307	Third green 2	6.966
	CRR073308	Third green 3	6.344
	CRR073309	Second white 1	6.620
	CRR073310	Second white 2	8.848
	CRR073311	Second white 3	9.325
	CRR073312	Silver flowering 1	7.915
	CRR073313	Silver flowering 2	6.809
	CRR073314	Silver flowering 3	3.940
	CRR073315	Gold flowering 1	6.632
	CRR073316	Gold flowering 2	7.973
	CRR073317	Gold flowering 3	5.774
	CRR073318	Tawny withering 1	9.621
	CRR073319	Tawny withering 2	10.343
	CRR073320	Tawny withering 3	12.315