Gene detail

Detail information of GWHGAAZE003204

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN70587.1	2.1122E-164	hypothetical protein VITISV_041523 [Vitis vinifera]
COG	YP_004271951.1	1E-67	triosephosphate isomerase
Swissprot	tr\|P48495\|TPIS_PETHY	1E-162	Triosephosphate isomerase, cytosolic
trEMBL	tr\|A5BV65\|A5BV65_VITVI	8E-165	Triosephosphate isomerase {ECO:0000256\|RuleBase:RU000517}
TAIR10	AT3G55440.1	2E-114	triosephosphate isomerase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	93832537	93838753	+
GWHAAZE00000001	mRNA	93832537	93838753	+
GWHAAZE00000001	exon	93832537	93832575	+
GWHAAZE00000001	exon	93833678	93833753	+
GWHAAZE00000001	exon	93834319	93834442	+
GWHAAZE00000001	exon	93834567	93834651	+
GWHAAZE00000001	exon	93834759	93834891	+
GWHAAZE00000001	exon	93835767	93835861	+
GWHAAZE00000001	exon	93837796	93837874	+
GWHAAZE00000001	exon	93838533	93838615	+
GWHAAZE00000001	exon	93838703	93838753	+
GWHAAZE00000001	CDS	93832537	93832575	+
GWHAAZE00000001	CDS	93833678	93833753	+
GWHAAZE00000001	CDS	93834319	93834442	+
GWHAAZE00000001	CDS	93834567	93834651	+
GWHAAZE00000001	CDS	93834759	93834891	+
GWHAAZE00000001	CDS	93835767	93835861	+
GWHAAZE00000001	CDS	93837796	93837874	+
GWHAAZE00000001	CDS	93838533	93838615	+
GWHAAZE00000001	CDS	93838703	93838753	+

Transcript Sequence
>GWHTAAZE003210 ATGGGTAGAAAATTCTTCGTCGGCGGCAACTGGAAATGCAATGGAACCTCAGAAGAGGTGAAGAAAATTGTGTCCACACTTAATGCTGGTCAAGTGCCGTCTAAAGATGTTGTGGAGGTCGTAGTGAGCCCTCCATTTGTGTTTCTCAAATTGGTGGAAAGTTCGTTGAGGCCTGAGTTTCATGTTGCGGCCCAAAATTGTTGGGTTAAGAAAGGAGGTGCTTTCACCGGTGAGGTTAGTGCTGAGATGCTCGTCAATCTGGGCATTCCTTGGGTCATCATTGGTCATTCTGAAAGGAGGCTTATTTTAAATGAATCAAACGAGTTTGTTGGAGACAAGGTTGCATATGCTCTTTCTCAAGGTTTGAAGGTAATTGCTTGTGTTGGGGAGACTCTGGAGCAGCGAGAATCAGGATCTACTATGGATGTTGTTGCTGCACAAACTAAGGCAATTGCAGATAAAGTCTCAAACTGGAGTAATGTTGTTTTGGCCTACGAGCCTGTTTGGGCAATTGGAACTGGGAAGGTTGCATCTCCTGCTCAGGCCCAAGAGGTACATTTAGGATTGAGGAAATGGCTTGAAGTAAACACCAGCACTGAAGTTGCTGCTACAACCAGGATTATTTATGGAGGATCTGTGACCGCTGCTAACTGCAAGGAATTGGCAGGGCAGCCTGATGTTGACGGCTTTCTAGTTGGAGGAGCTTCTCTCAAGCCTGAATTCATTGACATTATCAAGTCTGCTGAGGTGAAGAAAAATGCCTGA

Network for GWHGAAZE003204

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00121.19	TIM	6	245	2.10E-87

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01803	TPI, tpiA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Glycolysis / Gluconeogenesis	map00010
		Fructose and mannose metabolism	map00051
		Inositol phosphate metabolism	map00562
		Carbon fixation in photosynthetic organisms	map00710

Gene Ontology

GO term	Ontology	Name
GO:0006096	biological_process	glycolytic process
GO:0004807	molecular_function	triose-phosphate isomerase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	886.657
	SRR3591706	second leaf	646.529
	SRR3591707	mature leaf	528.954
	SRR3591708	Shoot apex	522.935
	SRR3591709	Stem	519.019
	SRR3591710	White floral bud	464.425
	SRR3591711	White flower	487.271
	SRR3591712	Green floral bud	573.601
	SRR3591713	Yellow flower	454.617
SRP173429	SRR8316895	Juvenile bud stage	365.490
	SRR8316896	Juvenile bud stage	433.156
	SRR8316897	Juvenile bud stage	264.076
	SRR8316894	Third green stage	237.157
	SRR8316900	Third green stage	939.530
	SRR8316901	Third green stage	793.004
	SRR8316898	Complete white stage	426.357
	SRR8316899	Complete white stage	1007.409
	SRR8316903	Complete white stage	509.254
	SRR8316902	Silver flowering stage	471.090
	SRR8316904	Silver flowering stage	534.119
	SRR8316905	Silver flowering stage	320.424
	SRR8316906	Gold flowering stage	928.150
	SRR8316907	Gold flowering stage	1196.550
	SRR8316908	Gold flowering stage	1059.343
SRP132670	SRR6706286	Control	894.846
	SRR6706287	Light intensity 50%	891.240
	SRR6706288	Light intensity 20%	1028.126
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	447.546
	CNS0095593	Slightly white alabastrum(diploid) 2	553.860
	CNS0095594	Slightly white alabastrum(diploid) 3	425.639
	CNS0095595	Whole white alabastrum(diploid) 2	522.850
	CNS0095596	Whole white alabastrum(diploid) 3	634.593
	CNS0095597	Whole white alabastrum(diploid) 4	542.848
	CNS0095598	Silvery flower (diploied) 1	399.947
	CNS0095599	Silvery flower (diploied) 2	440.060
	CNS0095600	Silvery flower (diploied) 3	554.868
	CNS0095601	Golden flower (diploid) 1	380.109
	CNS0095602	Golden flower (diploid) 2	458.147
	CNS0095603	Golden flower (diploid) 3	452.384
	CNS0095604	Slightly white alabastrum(tetraploid) 1	510.744
	CNS0095605	Slightly white alabastrum(tetraploid) 2	484.805
	CNS0095606	Slightly white alabastrum(tetraploid) 3	670.636
	CNS0095607	Whole white alabastrum(tetraploid) 1	357.921
	CNS0095608	Whole white alabastrum(tetraploid) 2	403.300
	CNS0095609	Whole white alabastrum(tetraploid) 3	650.004
	CNS0095610	Silvery flower (diploied) 1	619.709
	CNS0095611	Silvery flower (diploied) 2	577.775
	CNS0095612	Silvery flower (diploied) 3	529.089
	CNS0095613	Golden flower (tetraploid) 1	357.148
	CNS0095614	Golden flower (tetraploid) 2	478.793
	CNS0095615	Golden flower (tetraploid) 3	337.224
CRA001975	CRR073297	Stem 1	522.679
	CRR073298	Stem 2	526.155
	CRR073299	Stem 3	650.031
	CRR073300	Leaf 1	693.923
	CRR073301	Leaf 2	725.411
	CRR073302	Leaf 3	1135.340
	CRR073303	Juvenile bud 1	1072.803
	CRR073304	Juvenile bud 2	1159.991
	CRR073305	Juvenile bud 3	702.536
	CRR073306	Third green 1	776.681
	CRR073307	Third green 2	913.162
	CRR073308	Third green 3	689.624
	CRR073309	Second white 1	975.120
	CRR073310	Second white 2	587.170
	CRR073311	Second white 3	428.326
	CRR073312	Silver flowering 1	372.881
	CRR073313	Silver flowering 2	415.293
	CRR073314	Silver flowering 3	350.671
	CRR073315	Gold flowering 1	464.361
	CRR073316	Gold flowering 2	479.859
	CRR073317	Gold flowering 3	373.303
	CRR073318	Tawny withering 1	593.484
	CRR073319	Tawny withering 2	510.337
	CRR073320	Tawny withering 3	482.688